miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24809 5' -55.1 NC_005284.1 + 46902 0.66 0.731989
Target:  5'- cCGGCUUcgcaugcuGGCUaAUGGGCugGCCUa -3'
miRNA:   3'- aGUCGAGuu------CCGGcUACUCGugUGGG- -5'
24809 5' -55.1 NC_005284.1 + 18754 0.66 0.725591
Target:  5'- -gGGCUCGcGGUCgGGcagguguuuuauuucUGGGCGCGCCUg -3'
miRNA:   3'- agUCGAGUuCCGG-CU---------------ACUCGUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 29826 0.66 0.721308
Target:  5'- gCGGCUCcaAGGGagaCGcgGAGCGCAUg- -3'
miRNA:   3'- aGUCGAG--UUCCg--GCuaCUCGUGUGgg -5'
24809 5' -55.1 NC_005284.1 + 53870 0.66 0.721308
Target:  5'- cCAGCaCGAacauGCCGAUGc-CACGCCCg -3'
miRNA:   3'- aGUCGaGUUc---CGGCUACucGUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 9646 0.66 0.721308
Target:  5'- uUCAGCgc-AGGCCGAgcucgcGGGCAUGCg- -3'
miRNA:   3'- -AGUCGaguUCCGGCUa-----CUCGUGUGgg -5'
24809 5' -55.1 NC_005284.1 + 39628 0.66 0.699688
Target:  5'- aCGGCcgCAAGGuuGcgGcAGCGCACg- -3'
miRNA:   3'- aGUCGa-GUUCCggCuaC-UCGUGUGgg -5'
24809 5' -55.1 NC_005284.1 + 32012 0.66 0.688772
Target:  5'- -uGGUcgUUGAGGCUGAcGAucGCGCGCCCc -3'
miRNA:   3'- agUCG--AGUUCCGGCUaCU--CGUGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 10406 0.66 0.688772
Target:  5'- -aGGCgucgCGGgcGGCCGAUGAcGCGCAgUCg -3'
miRNA:   3'- agUCGa---GUU--CCGGCUACU-CGUGUgGG- -5'
24809 5' -55.1 NC_005284.1 + 39056 0.66 0.688772
Target:  5'- gUCGGCUUAcGGCCGAaaucgGAaaGCgGCCCa -3'
miRNA:   3'- -AGUCGAGUuCCGGCUa----CUcgUG-UGGG- -5'
24809 5' -55.1 NC_005284.1 + 4255 0.66 0.688772
Target:  5'- aCAGUUC--GGCCGcaaGAGCggcggcgacucGCACCCg -3'
miRNA:   3'- aGUCGAGuuCCGGCua-CUCG-----------UGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 44256 0.66 0.677801
Target:  5'- -aGGCcggCGAGGaauCGAUcGAGCGCugCCu -3'
miRNA:   3'- agUCGa--GUUCCg--GCUA-CUCGUGugGG- -5'
24809 5' -55.1 NC_005284.1 + 1672 0.67 0.666787
Target:  5'- --cGCcgugCGAGGCgUGAUGuAGCGCGCCg -3'
miRNA:   3'- aguCGa---GUUCCG-GCUAC-UCGUGUGGg -5'
24809 5' -55.1 NC_005284.1 + 54125 0.67 0.666787
Target:  5'- cCAaCUCGGaGCCGGUagccGGGCugGCCCg -3'
miRNA:   3'- aGUcGAGUUcCGGCUA----CUCGugUGGG- -5'
24809 5' -55.1 NC_005284.1 + 43849 0.67 0.665683
Target:  5'- cCGGCgaCGAGGCCGGccaugcGGGCcugcgcaucauucGCGCCCu -3'
miRNA:   3'- aGUCGa-GUUCCGGCUa-----CUCG-------------UGUGGG- -5'
24809 5' -55.1 NC_005284.1 + 39809 0.67 0.665683
Target:  5'- -gAGCuUCAaccGGGCCGcgugccgcauugcAUGGGCGCGgCCg -3'
miRNA:   3'- agUCG-AGU---UCCGGC-------------UACUCGUGUgGG- -5'
24809 5' -55.1 NC_005284.1 + 44774 0.67 0.655739
Target:  5'- cUCGGCUugcgCAAGGCCGcgGuccgucucggccAGCgACGCCg -3'
miRNA:   3'- -AGUCGA----GUUCCGGCuaC------------UCG-UGUGGg -5'
24809 5' -55.1 NC_005284.1 + 14490 0.67 0.64467
Target:  5'- gUCGGCUCuacgguguaGCCGAgaaacgGGGUAgCGCCCg -3'
miRNA:   3'- -AGUCGAGuuc------CGGCUa-----CUCGU-GUGGG- -5'
24809 5' -55.1 NC_005284.1 + 11849 0.67 0.633588
Target:  5'- gCGGCUCGcguugcAGGCCGAcuGGCGCGUCg -3'
miRNA:   3'- aGUCGAGU------UCCGGCUacUCGUGUGGg -5'
24809 5' -55.1 NC_005284.1 + 9184 0.67 0.622505
Target:  5'- gCAGCUCAAaucgauGGCCGAaGAgggaaaGCugACCg -3'
miRNA:   3'- aGUCGAGUU------CCGGCUaCU------CGugUGGg -5'
24809 5' -55.1 NC_005284.1 + 47785 0.67 0.622505
Target:  5'- gUCAGCccggCGAGcGCCaugucGAGCGCGCCa -3'
miRNA:   3'- -AGUCGa---GUUC-CGGcua--CUCGUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.