Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 53870 | 0.66 | 0.721308 |
Target: 5'- cCAGCaCGAacauGCCGAUGc-CACGCCCg -3' miRNA: 3'- aGUCGaGUUc---CGGCUACucGUGUGGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 24408 | 0.68 | 0.600376 |
Target: 5'- cCAGCaCAcgcGGGCCGAgc-GCAuCGCCCu -3' miRNA: 3'- aGUCGaGU---UCCGGCUacuCGU-GUGGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 14490 | 0.67 | 0.64467 |
Target: 5'- gUCGGCUCuacgguguaGCCGAgaaacgGGGUAgCGCCCg -3' miRNA: 3'- -AGUCGAGuuc------CGGCUa-----CUCGU-GUGGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 44774 | 0.67 | 0.655739 |
Target: 5'- cUCGGCUugcgCAAGGCCGcgGuccgucucggccAGCgACGCCg -3' miRNA: 3'- -AGUCGA----GUUCCGGCuaC------------UCG-UGUGGg -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 1672 | 0.67 | 0.666787 |
Target: 5'- --cGCcgugCGAGGCgUGAUGuAGCGCGCCg -3' miRNA: 3'- aguCGa---GUUCCG-GCUAC-UCGUGUGGg -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 44256 | 0.66 | 0.677801 |
Target: 5'- -aGGCcggCGAGGaauCGAUcGAGCGCugCCu -3' miRNA: 3'- agUCGa--GUUCCg--GCUA-CUCGUGugGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 42479 | 0.7 | 0.492687 |
Target: 5'- uUCAaucGCUCAAGGU--GUGcgcGCACGCCCg -3' miRNA: 3'- -AGU---CGAGUUCCGgcUACu--CGUGUGGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 54321 | 0.68 | 0.611432 |
Target: 5'- uUCGGCUUugcGCCGAccaGGCGCugCCg -3' miRNA: 3'- -AGUCGAGuucCGGCUac-UCGUGugGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 43849 | 0.67 | 0.665683 |
Target: 5'- cCGGCgaCGAGGCCGGccaugcGGGCcugcgcaucauucGCGCCCu -3' miRNA: 3'- aGUCGa-GUUCCGGCUa-----CUCG-------------UGUGGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 32012 | 0.66 | 0.688772 |
Target: 5'- -uGGUcgUUGAGGCUGAcGAucGCGCGCCCc -3' miRNA: 3'- agUCG--AGUUCCGGCUaCU--CGUGUGGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 29826 | 0.66 | 0.721308 |
Target: 5'- gCGGCUCcaAGGGagaCGcgGAGCGCAUg- -3' miRNA: 3'- aGUCGAG--UUCCg--GCuaCUCGUGUGgg -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 24191 | 0.75 | 0.24031 |
Target: 5'- cUAGUUCAGcGGcCCGAUgGAGCGCGCCa -3' miRNA: 3'- aGUCGAGUU-CC-GGCUA-CUCGUGUGGg -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 39628 | 0.66 | 0.699688 |
Target: 5'- aCGGCcgCAAGGuuGcgGcAGCGCACg- -3' miRNA: 3'- aGUCGa-GUUCCggCuaC-UCGUGUGgg -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 47785 | 0.67 | 0.622505 |
Target: 5'- gUCAGCccggCGAGcGCCaugucGAGCGCGCCa -3' miRNA: 3'- -AGUCGa---GUUC-CGGcua--CUCGUGUGGg -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 52143 | 1.13 | 0.000477 |
Target: 5'- aUCAGCUCAAGGCCGAUGAGCACACCCg -3' miRNA: 3'- -AGUCGAGUUCCGGCUACUCGUGUGGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 38832 | 0.68 | 0.556515 |
Target: 5'- aCGGCgaacgUGAGGCCGgcGucGCGCGCCg -3' miRNA: 3'- aGUCGa----GUUCCGGCuaCu-CGUGUGGg -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 54125 | 0.67 | 0.666787 |
Target: 5'- cCAaCUCGGaGCCGGUagccGGGCugGCCCg -3' miRNA: 3'- aGUcGAGUUcCGGCUA----CUCGugUGGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 39809 | 0.67 | 0.665683 |
Target: 5'- -gAGCuUCAaccGGGCCGcgugccgcauugcAUGGGCGCGgCCg -3' miRNA: 3'- agUCG-AGU---UCCGGC-------------UACUCGUGUgGG- -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 11849 | 0.67 | 0.633588 |
Target: 5'- gCGGCUCGcguugcAGGCCGAcuGGCGCGUCg -3' miRNA: 3'- aGUCGAGU------UCCGGCUacUCGUGUGGg -5' |
|||||||
24809 | 5' | -55.1 | NC_005284.1 | + | 9184 | 0.67 | 0.622505 |
Target: 5'- gCAGCUCAAaucgauGGCCGAaGAgggaaaGCugACCg -3' miRNA: 3'- aGUCGAGUU------CCGGCUaCU------CGugUGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home