miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 3' -56.6 NC_005284.1 + 43820 0.66 0.651429
Target:  5'- uAAGCG--GGa---CCGCCGUGCGCc -3'
miRNA:   3'- cUUCGCuaCCguuaGGCGGCACGCGc -5'
24810 3' -56.6 NC_005284.1 + 27589 0.66 0.640472
Target:  5'- aAAGCGAaggccgagGGCAAagcgCCGCCGauuaUGCGUa -3'
miRNA:   3'- cUUCGCUa-------CCGUUa---GGCGGC----ACGCGc -5'
24810 3' -56.6 NC_005284.1 + 21328 0.66 0.629506
Target:  5'- cGGGCGAcUGGCGGggCGCgUGUcGCGCGa -3'
miRNA:   3'- cUUCGCU-ACCGUUagGCG-GCA-CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 6568 0.66 0.629506
Target:  5'- --uGCGAaGGUGAUCCGUgaCGagGCGCGu -3'
miRNA:   3'- cuuCGCUaCCGUUAGGCG--GCa-CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 53651 0.66 0.618544
Target:  5'- uGGAGCacGAUGGCGAcgCGCCGU-CGCc -3'
miRNA:   3'- -CUUCG--CUACCGUUagGCGGCAcGCGc -5'
24810 3' -56.6 NC_005284.1 + 30358 0.66 0.596662
Target:  5'- cGAGGCGAUcgagcgcgagGGCGAUgCGCucggcccgCGUGUGCu -3'
miRNA:   3'- -CUUCGCUA----------CCGUUAgGCG--------GCACGCGc -5'
24810 3' -56.6 NC_005284.1 + 32971 0.66 0.595571
Target:  5'- gGAAGCGccgGGCAcgCCgucgccaccggcuGCCGUGCaGUGu -3'
miRNA:   3'- -CUUCGCua-CCGUuaGG-------------CGGCACG-CGC- -5'
24810 3' -56.6 NC_005284.1 + 26505 0.67 0.590118
Target:  5'- -uGGCGAUccagucugaugcaucGGCAGUUCGCCGcGcCGCu -3'
miRNA:   3'- cuUCGCUA---------------CCGUUAGGCGGCaC-GCGc -5'
24810 3' -56.6 NC_005284.1 + 1376 0.67 0.585762
Target:  5'- aGggGaCGAUuGGacCGAUCCGCgCGUGCugGCGa -3'
miRNA:   3'- -CuuC-GCUA-CC--GUUAGGCG-GCACG--CGC- -5'
24810 3' -56.6 NC_005284.1 + 49322 0.67 0.5749
Target:  5'- -cGGCGAUGGUuggcaCgGCacgCGUGCGCGa -3'
miRNA:   3'- cuUCGCUACCGuua--GgCG---GCACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 38575 0.67 0.553325
Target:  5'- cGAGCGAgacGGCcguUCgGCCGaGCGCa -3'
miRNA:   3'- cUUCGCUa--CCGuu-AGgCGGCaCGCGc -5'
24810 3' -56.6 NC_005284.1 + 51413 0.67 0.553325
Target:  5'- gGAAGUGcgGGCAcagugugCUGCCGUggugaGUGCGg -3'
miRNA:   3'- -CUUCGCuaCCGUua-----GGCGGCA-----CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 8513 0.67 0.553325
Target:  5'- --cGCuGAUGGCu-UCCGCCGacaucggacGCGCGu -3'
miRNA:   3'- cuuCG-CUACCGuuAGGCGGCa--------CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 38972 0.67 0.542627
Target:  5'- --cGCGAUGcUGAUCCGCgGgcUGCGCGc -3'
miRNA:   3'- cuuCGCUACcGUUAGGCGgC--ACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 45642 0.67 0.542627
Target:  5'- cGggGCaGGcUGGCGGcUCGUCGgUGCGCGa -3'
miRNA:   3'- -CuuCG-CU-ACCGUUaGGCGGC-ACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 6817 0.68 0.531998
Target:  5'- cGAGGcCGAgggGGCGAUUCGCaccgaGUugGCGCGc -3'
miRNA:   3'- -CUUC-GCUa--CCGUUAGGCGg----CA--CGCGC- -5'
24810 3' -56.6 NC_005284.1 + 12322 0.68 0.490303
Target:  5'- uGAGCGAUugaacgcagggaGGCGAUCCGgCUucGCGCGa -3'
miRNA:   3'- cUUCGCUA------------CCGUUAGGC-GGcaCGCGC- -5'
24810 3' -56.6 NC_005284.1 + 15477 0.68 0.480114
Target:  5'- --cGCGAcUGGUAucUCGCCGaGCGCGg -3'
miRNA:   3'- cuuCGCU-ACCGUuaGGCGGCaCGCGC- -5'
24810 3' -56.6 NC_005284.1 + 10640 0.68 0.479101
Target:  5'- cGAGCGgcGGCGAagCGCUgcgcgaggaacugGUGCGCGc -3'
miRNA:   3'- cUUCGCuaCCGUUagGCGG-------------CACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 9751 0.69 0.47003
Target:  5'- cGAAGCGcgGGCGGUCgaGgCGacgGCGCa -3'
miRNA:   3'- -CUUCGCuaCCGUUAGg-CgGCa--CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.