miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 5' -52.9 NC_005284.1 + 50781 1.1 0.001368
Target:  5'- uUUCACCGCGUCGAUUCGCGCAUUCGCg -3'
miRNA:   3'- -AAGUGGCGCAGCUAAGCGCGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 46899 0.81 0.15496
Target:  5'- gUCGCCGaCGUCGGcUCGCGCAcugcgaucuuUUCGCc -3'
miRNA:   3'- aAGUGGC-GCAGCUaAGCGCGU----------AAGCG- -5'
24810 5' -52.9 NC_005284.1 + 46079 0.78 0.215459
Target:  5'- -gCGCCGCGUCGAgcgCGCGCAc-CGUg -3'
miRNA:   3'- aaGUGGCGCAGCUaa-GCGCGUaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 44110 0.77 0.266263
Target:  5'- -cCGCCGUGUCGA-UCGCGCccgcggCGCg -3'
miRNA:   3'- aaGUGGCGCAGCUaAGCGCGuaa---GCG- -5'
24810 5' -52.9 NC_005284.1 + 28408 0.76 0.308867
Target:  5'- -aCGCUGcCGUUGAUUCGCGCGUguuguagaccggCGCg -3'
miRNA:   3'- aaGUGGC-GCAGCUAAGCGCGUAa-----------GCG- -5'
24810 5' -52.9 NC_005284.1 + 40158 0.75 0.318305
Target:  5'- aUUCACgGCGUCGAgguagCGCGCGagCGUu -3'
miRNA:   3'- -AAGUGgCGCAGCUaa---GCGCGUaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 44707 0.74 0.377632
Target:  5'- -cCGCCGCGgucgCGGUcgcCGCGCGUUcCGCu -3'
miRNA:   3'- aaGUGGCGCa---GCUAa--GCGCGUAA-GCG- -5'
24810 5' -52.9 NC_005284.1 + 9092 0.74 0.395895
Target:  5'- --aGCCGUGUCGA--CGCGCggUCGUg -3'
miRNA:   3'- aagUGGCGCAGCUaaGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 43217 0.74 0.405238
Target:  5'- -gCuCCGCGUCGAUcUGCGCAcugCGCu -3'
miRNA:   3'- aaGuGGCGCAGCUAaGCGCGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 20815 0.73 0.443957
Target:  5'- -gCAuaGCGUCGG-UCGCGUcgUCGCu -3'
miRNA:   3'- aaGUggCGCAGCUaAGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 39307 0.72 0.495127
Target:  5'- -aCGCCGCGcucggCGAgauaccagUCGCGCAcgaUCGCg -3'
miRNA:   3'- aaGUGGCGCa----GCUa-------AGCGCGUa--AGCG- -5'
24810 5' -52.9 NC_005284.1 + 25531 0.71 0.527084
Target:  5'- --gGCCGuCGUCGug-CGCGCG-UCGCu -3'
miRNA:   3'- aagUGGC-GCAGCuaaGCGCGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 16177 0.71 0.545532
Target:  5'- cUCGgCGCGUCGAUggcgcugggcggcaUCGUGCAgaUGCu -3'
miRNA:   3'- aAGUgGCGCAGCUA--------------AGCGCGUaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 46040 0.71 0.54881
Target:  5'- -cCGCUGCGgCGGcuugUGCGUAUUCGCg -3'
miRNA:   3'- aaGUGGCGCaGCUaa--GCGCGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 4090 0.71 0.54881
Target:  5'- ---gUCGCGUCGAUcUCGCGCuucCGCu -3'
miRNA:   3'- aaguGGCGCAGCUA-AGCGCGuaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 47435 0.71 0.559779
Target:  5'- --gGCCGCGUCGAgaucggUCGaCGCAacuUUCGa -3'
miRNA:   3'- aagUGGCGCAGCUa-----AGC-GCGU---AAGCg -5'
24810 5' -52.9 NC_005284.1 + 38165 0.71 0.570808
Target:  5'- -cCugCGUGcCGGUUCGCGCG-UCGa -3'
miRNA:   3'- aaGugGCGCaGCUAAGCGCGUaAGCg -5'
24810 5' -52.9 NC_005284.1 + 6360 0.71 0.570808
Target:  5'- --uGCaCGCGgCGAUUgGCGCGUcuUCGCa -3'
miRNA:   3'- aagUG-GCGCaGCUAAgCGCGUA--AGCG- -5'
24810 5' -52.9 NC_005284.1 + 11348 0.71 0.575235
Target:  5'- -aCugCGCGUCGAggcggUCGCaaccgacaagcugacGCAgUCGCa -3'
miRNA:   3'- aaGugGCGCAGCUa----AGCG---------------CGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 20180 0.7 0.58189
Target:  5'- -cCACCGCGaaGAUUCaCGCugAUUCGCc -3'
miRNA:   3'- aaGUGGCGCagCUAAGcGCG--UAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.