miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 5' -52.9 NC_005284.1 + 20815 0.73 0.443957
Target:  5'- -gCAuaGCGUCGG-UCGCGUcgUCGCu -3'
miRNA:   3'- aaGUggCGCAGCUaAGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 47292 0.67 0.768564
Target:  5'- gUCGCCGCGU-GAUcaaCGCGCGcgaGCu -3'
miRNA:   3'- aAGUGGCGCAgCUAa--GCGCGUaagCG- -5'
24810 5' -52.9 NC_005284.1 + 31626 0.67 0.778804
Target:  5'- --gGCgGCGUCGAgg-GCGCAUUC-Ca -3'
miRNA:   3'- aagUGgCGCAGCUaagCGCGUAAGcG- -5'
24810 5' -52.9 NC_005284.1 + 15179 0.67 0.778804
Target:  5'- --gGCCGUGcCGAccgaccagUUCGCGC--UCGCg -3'
miRNA:   3'- aagUGGCGCaGCU--------AAGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 35645 0.66 0.808535
Target:  5'- -gUACUGCGUCaGGUUCacgauGC-CGUUCGCg -3'
miRNA:   3'- aaGUGGCGCAG-CUAAG-----CGcGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 23506 0.66 0.818077
Target:  5'- cUCGCCGUGUaCGGUgCGCGagaAUacaugaaaggUCGCg -3'
miRNA:   3'- aAGUGGCGCA-GCUAaGCGCg--UA----------AGCG- -5'
24810 5' -52.9 NC_005284.1 + 30251 0.66 0.818077
Target:  5'- gUCGgC-CGUCGAgcggGCGCGUUCGUu -3'
miRNA:   3'- aAGUgGcGCAGCUaag-CGCGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 39526 0.66 0.836542
Target:  5'- cUCGCCGCGgcCGA--UGUGCuucaUCGCa -3'
miRNA:   3'- aAGUGGCGCa-GCUaaGCGCGua--AGCG- -5'
24810 5' -52.9 NC_005284.1 + 38311 0.66 0.848943
Target:  5'- --aACUGCGuUCGucccucauggguacuGUUCGCGCcAUUCGUa -3'
miRNA:   3'- aagUGGCGC-AGC---------------UAAGCGCG-UAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 47612 0.68 0.747658
Target:  5'- aUCACUGUGUCGca-CGCGCugaagcUUGCg -3'
miRNA:   3'- aAGUGGCGCAGCuaaGCGCGua----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 21627 0.68 0.747658
Target:  5'- -gCGCCGCGcUCGAcgccgagcagCGUGCGaUCGCc -3'
miRNA:   3'- aaGUGGCGC-AGCUaa--------GCGCGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 25531 0.71 0.527084
Target:  5'- --gGCCGuCGUCGug-CGCGCG-UCGCu -3'
miRNA:   3'- aagUGGC-GCAGCuaaGCGCGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 16177 0.71 0.545532
Target:  5'- cUCGgCGCGUCGAUggcgcugggcggcaUCGUGCAgaUGCu -3'
miRNA:   3'- aAGUgGCGCAGCUA--------------AGCGCGUaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 11348 0.71 0.575235
Target:  5'- -aCugCGCGUCGAggcggUCGCaaccgacaagcugacGCAgUCGCa -3'
miRNA:   3'- aaGugGCGCAGCUa----AGCG---------------CGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 33785 0.7 0.615356
Target:  5'- -gCGCCGacuucguaGUCGA-UCGCGcCGUUCGUa -3'
miRNA:   3'- aaGUGGCg-------CAGCUaAGCGC-GUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 28590 0.69 0.650076
Target:  5'- cUUCACCGUGUauccaaagugcgacaGGUUgGCGCGUUUGg -3'
miRNA:   3'- -AAGUGGCGCAg--------------CUAAgCGCGUAAGCg -5'
24810 5' -52.9 NC_005284.1 + 9906 0.68 0.737017
Target:  5'- -gCGCCgaaGCGUCGc-UCGCGCucgCGCa -3'
miRNA:   3'- aaGUGG---CGCAGCuaAGCGCGuaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 21672 0.68 0.737017
Target:  5'- -cCGCCGCGUCGGcggUgGCcGCcgUCGa -3'
miRNA:   3'- aaGUGGCGCAGCUa--AgCG-CGuaAGCg -5'
24810 5' -52.9 NC_005284.1 + 31473 0.68 0.737017
Target:  5'- -cCGCCGUGcCGccggaaaagCGCGCAUUgCGCg -3'
miRNA:   3'- aaGUGGCGCaGCuaa------GCGCGUAA-GCG- -5'
24810 5' -52.9 NC_005284.1 + 50781 1.1 0.001368
Target:  5'- uUUCACCGCGUCGAUUCGCGCAUUCGCg -3'
miRNA:   3'- -AAGUGGCGCAGCUAAGCGCGUAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.