miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 5' -52.9 NC_005284.1 + 43446 0.67 0.768564
Target:  5'- --gACCGCcUCGA--CGCGCAguugCGCg -3'
miRNA:   3'- aagUGGCGcAGCUaaGCGCGUaa--GCG- -5'
24810 5' -52.9 NC_005284.1 + 48461 0.67 0.758178
Target:  5'- aUCGCgGCGaaaUCGAa-UGCGCAUacUCGCg -3'
miRNA:   3'- aAGUGgCGC---AGCUaaGCGCGUA--AGCG- -5'
24810 5' -52.9 NC_005284.1 + 54351 0.67 0.758178
Target:  5'- cUCGCCGgGUCGAgccccagcaUUGCGCcgaaacUCGCc -3'
miRNA:   3'- aAGUGGCgCAGCUa--------AGCGCGua----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 33216 0.67 0.758178
Target:  5'- -gCugCGCGUCGAacgccCGCGCGgccUGCu -3'
miRNA:   3'- aaGugGCGCAGCUaa---GCGCGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 31198 0.68 0.747658
Target:  5'- -cCGCCGCGUCGAUgaacCGCuCGaccCGCu -3'
miRNA:   3'- aaGUGGCGCAGCUAa---GCGcGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 16115 0.68 0.743416
Target:  5'- uUUCGCCGCGUCGAcccaugcauaccgUCG-GUAaUUGCg -3'
miRNA:   3'- -AAGUGGCGCAGCUa------------AGCgCGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 47224 0.68 0.715419
Target:  5'- uUUCGCC-CGUCGca-CGCGCGgcaCGCa -3'
miRNA:   3'- -AAGUGGcGCAGCuaaGCGCGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 46782 0.68 0.693479
Target:  5'- aUUCGCCugcaugugcGCGUCGucacUCGCGCg--CGCg -3'
miRNA:   3'- -AAGUGG---------CGCAGCua--AGCGCGuaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 10492 0.68 0.693479
Target:  5'- uUUCuuCGaCGUagaGGUUCGCGCcgUCGUa -3'
miRNA:   3'- -AAGugGC-GCAg--CUAAGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 4674 0.67 0.788888
Target:  5'- -aCGCCGCGUgcgCGA-UCGCcGCGUUaCGUu -3'
miRNA:   3'- aaGUGGCGCA---GCUaAGCG-CGUAA-GCG- -5'
24810 5' -52.9 NC_005284.1 + 32855 0.67 0.788888
Target:  5'- --gGCCGUcaguuuGUCGAUcUCGCGCugaucgUCGCc -3'
miRNA:   3'- aagUGGCG------CAGCUA-AGCGCGua----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 43530 0.66 0.845446
Target:  5'- cUUCGCCGCG-CGAgcCGCugccGCGUUgGUc -3'
miRNA:   3'- -AAGUGGCGCaGCUaaGCG----CGUAAgCG- -5'
24810 5' -52.9 NC_005284.1 + 37198 0.66 0.845446
Target:  5'- --gACCGUGUaaCGcgUCuuGCGUUCGCu -3'
miRNA:   3'- aagUGGCGCA--GCuaAGcgCGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 6874 0.66 0.845446
Target:  5'- aUCACCuuggcCGUCGGcgggaacugcUCGCGCAUagCGCg -3'
miRNA:   3'- aAGUGGc----GCAGCUa---------AGCGCGUAa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 1164 0.66 0.845446
Target:  5'- gUCGCuCGUcucGUCGAUcUGCGUAUugcagUCGCa -3'
miRNA:   3'- aAGUG-GCG---CAGCUAaGCGCGUA-----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 102 0.66 0.836542
Target:  5'- gUCACCGCaacCGc-UCGCGCGccgucUUCGCc -3'
miRNA:   3'- aAGUGGCGca-GCuaAGCGCGU-----AAGCG- -5'
24810 5' -52.9 NC_005284.1 + 45880 0.66 0.814284
Target:  5'- cUCGgcugUCGCGUCGAgcgguugccguggUCGCGCGcgaugCGCa -3'
miRNA:   3'- aAGU----GGCGCAGCUa------------AGCGCGUaa---GCG- -5'
24810 5' -52.9 NC_005284.1 + 37802 0.67 0.798801
Target:  5'- gUCGCCGUGUgCGcGUUCG-GCGUgaugcggCGCa -3'
miRNA:   3'- aAGUGGCGCA-GC-UAAGCgCGUAa------GCG- -5'
24810 5' -52.9 NC_005284.1 + 8356 0.67 0.798801
Target:  5'- --gACgGCGaUCGGUUCGUucgcuccaucGCAUUUGCa -3'
miRNA:   3'- aagUGgCGC-AGCUAAGCG----------CGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 21343 0.67 0.798801
Target:  5'- -gCACUGCGgaUCGAcuacCGCGCAggCGUg -3'
miRNA:   3'- aaGUGGCGC--AGCUaa--GCGCGUaaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.