miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 5' -52.9 NC_005284.1 + 20180 0.7 0.58189
Target:  5'- -cCACCGCGaaGAUUCaCGCugAUUCGCc -3'
miRNA:   3'- aaGUGGCGCagCUAAGcGCG--UAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 20815 0.73 0.443957
Target:  5'- -gCAuaGCGUCGG-UCGCGUcgUCGCu -3'
miRNA:   3'- aaGUggCGCAGCUaAGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 21343 0.67 0.798801
Target:  5'- -gCACUGCGgaUCGAcuacCGCGCAggCGUg -3'
miRNA:   3'- aaGUGGCGC--AGCUaa--GCGCGUaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 21627 0.68 0.747658
Target:  5'- -gCGCCGCGcUCGAcgccgagcagCGUGCGaUCGCc -3'
miRNA:   3'- aaGUGGCGC-AGCUaa--------GCGCGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 21672 0.68 0.737017
Target:  5'- -cCGCCGCGUCGGcggUgGCcGCcgUCGa -3'
miRNA:   3'- aaGUGGCGCAGCUa--AgCG-CGuaAGCg -5'
24810 5' -52.9 NC_005284.1 + 23506 0.66 0.818077
Target:  5'- cUCGCCGUGUaCGGUgCGCGagaAUacaugaaaggUCGCg -3'
miRNA:   3'- aAGUGGCGCA-GCUAaGCGCg--UA----------AGCG- -5'
24810 5' -52.9 NC_005284.1 + 25531 0.71 0.527084
Target:  5'- --gGCCGuCGUCGug-CGCGCG-UCGCu -3'
miRNA:   3'- aagUGGC-GCAGCuaaGCGCGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 28408 0.76 0.308867
Target:  5'- -aCGCUGcCGUUGAUUCGCGCGUguuguagaccggCGCg -3'
miRNA:   3'- aaGUGGC-GCAGCUAAGCGCGUAa-----------GCG- -5'
24810 5' -52.9 NC_005284.1 + 28590 0.69 0.650076
Target:  5'- cUUCACCGUGUauccaaagugcgacaGGUUgGCGCGUUUGg -3'
miRNA:   3'- -AAGUGGCGCAg--------------CUAAgCGCGUAAGCg -5'
24810 5' -52.9 NC_005284.1 + 30251 0.66 0.818077
Target:  5'- gUCGgC-CGUCGAgcggGCGCGUUCGUu -3'
miRNA:   3'- aAGUgGcGCAGCUaag-CGCGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 31198 0.68 0.747658
Target:  5'- -cCGCCGCGUCGAUgaacCGCuCGaccCGCu -3'
miRNA:   3'- aaGUGGCGCAGCUAa---GCGcGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 31473 0.68 0.737017
Target:  5'- -cCGCCGUGcCGccggaaaagCGCGCAUUgCGCg -3'
miRNA:   3'- aaGUGGCGCaGCuaa------GCGCGUAA-GCG- -5'
24810 5' -52.9 NC_005284.1 + 31626 0.67 0.778804
Target:  5'- --gGCgGCGUCGAgg-GCGCAUUC-Ca -3'
miRNA:   3'- aagUGgCGCAGCUaagCGCGUAAGcG- -5'
24810 5' -52.9 NC_005284.1 + 32186 0.7 0.593014
Target:  5'- --aGCCGC-UCGAUguaCGCAUUCGCg -3'
miRNA:   3'- aagUGGCGcAGCUAagcGCGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 32855 0.67 0.788888
Target:  5'- --gGCCGUcaguuuGUCGAUcUCGCGCugaucgUCGCc -3'
miRNA:   3'- aagUGGCG------CAGCUA-AGCGCGua----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 33216 0.67 0.758178
Target:  5'- -gCugCGCGUCGAacgccCGCGCGgccUGCu -3'
miRNA:   3'- aaGugGCGCAGCUaa---GCGCGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 33785 0.7 0.615356
Target:  5'- -gCGCCGacuucguaGUCGA-UCGCGcCGUUCGUa -3'
miRNA:   3'- aaGUGGCg-------CAGCUaAGCGC-GUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 35645 0.66 0.808535
Target:  5'- -gUACUGCGUCaGGUUCacgauGC-CGUUCGCg -3'
miRNA:   3'- aaGUGGCGCAG-CUAAG-----CGcGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 36588 0.67 0.788888
Target:  5'- -gCGCCGuCGUCGA-UCGcCGCGUacuuccccggcUCGUa -3'
miRNA:   3'- aaGUGGC-GCAGCUaAGC-GCGUA-----------AGCG- -5'
24810 5' -52.9 NC_005284.1 + 37198 0.66 0.845446
Target:  5'- --gACCGUGUaaCGcgUCuuGCGUUCGCu -3'
miRNA:   3'- aagUGGCGCA--GCuaAGcgCGUAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.