miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 5' -52.9 NC_005284.1 + 102 0.66 0.836542
Target:  5'- gUCACCGCaacCGc-UCGCGCGccgucUUCGCc -3'
miRNA:   3'- aAGUGGCGca-GCuaAGCGCGU-----AAGCG- -5'
24810 5' -52.9 NC_005284.1 + 339 0.69 0.681302
Target:  5'- -gCACCGCGUCGGacuuccaUUugacggccucgUGCGCAUguugaUCGCa -3'
miRNA:   3'- aaGUGGCGCAGCU-------AA-----------GCGCGUA-----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 1164 0.66 0.845446
Target:  5'- gUCGCuCGUcucGUCGAUcUGCGUAUugcagUCGCa -3'
miRNA:   3'- aAGUG-GCG---CAGCUAaGCGCGUA-----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 1655 0.69 0.671295
Target:  5'- gUCACCGCGUCcuguUUCGCcgugcgagGCGUgauguagCGCg -3'
miRNA:   3'- aAGUGGCGCAGcu--AAGCG--------CGUAa------GCG- -5'
24810 5' -52.9 NC_005284.1 + 3515 0.68 0.693479
Target:  5'- -gCGCCGU-UCGAagcacguucUUCGCGCGUggcUCGCu -3'
miRNA:   3'- aaGUGGCGcAGCU---------AAGCGCGUA---AGCG- -5'
24810 5' -52.9 NC_005284.1 + 4090 0.71 0.54881
Target:  5'- ---gUCGCGUCGAUcUCGCGCuucCGCu -3'
miRNA:   3'- aaguGGCGCAGCUA-AGCGCGuaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 4674 0.67 0.788888
Target:  5'- -aCGCCGCGUgcgCGA-UCGCcGCGUUaCGUu -3'
miRNA:   3'- aaGUGGCGCA---GCUaAGCG-CGUAA-GCG- -5'
24810 5' -52.9 NC_005284.1 + 6360 0.71 0.570808
Target:  5'- --uGCaCGCGgCGAUUgGCGCGUcuUCGCa -3'
miRNA:   3'- aagUG-GCGCaGCUAAgCGCGUA--AGCG- -5'
24810 5' -52.9 NC_005284.1 + 6874 0.66 0.845446
Target:  5'- aUCACCuuggcCGUCGGcgggaacugcUCGCGCAUagCGCg -3'
miRNA:   3'- aAGUGGc----GCAGCUa---------AGCGCGUAa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 7917 0.69 0.671295
Target:  5'- aUCGCCgGCGcaagguccggUCGGUUgGCGauaAUUCGCg -3'
miRNA:   3'- aAGUGG-CGC----------AGCUAAgCGCg--UAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 8356 0.67 0.798801
Target:  5'- --gACgGCGaUCGGUUCGUucgcuccaucGCAUUUGCa -3'
miRNA:   3'- aagUGgCGC-AGCUAAGCG----------CGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 9092 0.74 0.395895
Target:  5'- --aGCCGUGUCGA--CGCGCggUCGUg -3'
miRNA:   3'- aagUGGCGCAGCUaaGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 9906 0.68 0.737017
Target:  5'- -gCGCCgaaGCGUCGc-UCGCGCucgCGCa -3'
miRNA:   3'- aaGUGG---CGCAGCuaAGCGCGuaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 10492 0.68 0.693479
Target:  5'- uUUCuuCGaCGUagaGGUUCGCGCcgUCGUa -3'
miRNA:   3'- -AAGugGC-GCAg--CUAAGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 11348 0.71 0.575235
Target:  5'- -aCugCGCGUCGAggcggUCGCaaccgacaagcugacGCAgUCGCa -3'
miRNA:   3'- aaGugGCGCAGCUa----AGCG---------------CGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 11421 0.69 0.660139
Target:  5'- -gCGCUGCGUCGA-UCGCGaaaacCGCc -3'
miRNA:   3'- aaGUGGCGCAGCUaAGCGCguaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 15179 0.67 0.778804
Target:  5'- --gGCCGUGcCGAccgaccagUUCGCGC--UCGCg -3'
miRNA:   3'- aagUGGCGCaGCU--------AAGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 15800 0.69 0.671295
Target:  5'- -gCGuuGCGUCGccagCGCGCAgccCGCg -3'
miRNA:   3'- aaGUggCGCAGCuaa-GCGCGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 16115 0.68 0.743416
Target:  5'- uUUCGCCGCGUCGAcccaugcauaccgUCG-GUAaUUGCg -3'
miRNA:   3'- -AAGUGGCGCAGCUa------------AGCgCGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 16177 0.71 0.545532
Target:  5'- cUCGgCGCGUCGAUggcgcugggcggcaUCGUGCAgaUGCu -3'
miRNA:   3'- aAGUgGCGCAGCUA--------------AGCGCGUaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.