miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 5' -52.9 NC_005284.1 + 54351 0.67 0.758178
Target:  5'- cUCGCCGgGUCGAgccccagcaUUGCGCcgaaacUCGCc -3'
miRNA:   3'- aAGUGGCgCAGCUa--------AGCGCGua----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 50781 1.1 0.001368
Target:  5'- uUUCACCGCGUCGAUUCGCGCAUUCGCg -3'
miRNA:   3'- -AAGUGGCGCAGCUAAGCGCGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 48461 0.67 0.758178
Target:  5'- aUCGCgGCGaaaUCGAa-UGCGCAUacUCGCg -3'
miRNA:   3'- aAGUGgCGC---AGCUaaGCGCGUA--AGCG- -5'
24810 5' -52.9 NC_005284.1 + 47612 0.68 0.747658
Target:  5'- aUCACUGUGUCGca-CGCGCugaagcUUGCg -3'
miRNA:   3'- aAGUGGCGCAGCuaaGCGCGua----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 47435 0.71 0.559779
Target:  5'- --gGCCGCGUCGAgaucggUCGaCGCAacuUUCGa -3'
miRNA:   3'- aagUGGCGCAGCUa-----AGC-GCGU---AAGCg -5'
24810 5' -52.9 NC_005284.1 + 47292 0.67 0.768564
Target:  5'- gUCGCCGCGU-GAUcaaCGCGCGcgaGCu -3'
miRNA:   3'- aAGUGGCGCAgCUAa--GCGCGUaagCG- -5'
24810 5' -52.9 NC_005284.1 + 47224 0.68 0.715419
Target:  5'- uUUCGCC-CGUCGca-CGCGCGgcaCGCa -3'
miRNA:   3'- -AAGUGGcGCAGCuaaGCGCGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 46899 0.81 0.15496
Target:  5'- gUCGCCGaCGUCGGcUCGCGCAcugcgaucuuUUCGCc -3'
miRNA:   3'- aAGUGGC-GCAGCUaAGCGCGU----------AAGCG- -5'
24810 5' -52.9 NC_005284.1 + 46782 0.68 0.693479
Target:  5'- aUUCGCCugcaugugcGCGUCGucacUCGCGCg--CGCg -3'
miRNA:   3'- -AAGUGG---------CGCAGCua--AGCGCGuaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 46079 0.78 0.215459
Target:  5'- -gCGCCGCGUCGAgcgCGCGCAc-CGUg -3'
miRNA:   3'- aaGUGGCGCAGCUaa-GCGCGUaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 46040 0.71 0.54881
Target:  5'- -cCGCUGCGgCGGcuugUGCGUAUUCGCg -3'
miRNA:   3'- aaGUGGCGCaGCUaa--GCGCGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 45880 0.66 0.814284
Target:  5'- cUCGgcugUCGCGUCGAgcgguugccguggUCGCGCGcgaugCGCa -3'
miRNA:   3'- aAGU----GGCGCAGCUa------------AGCGCGUaa---GCG- -5'
24810 5' -52.9 NC_005284.1 + 44707 0.74 0.377632
Target:  5'- -cCGCCGCGgucgCGGUcgcCGCGCGUUcCGCu -3'
miRNA:   3'- aaGUGGCGCa---GCUAa--GCGCGUAA-GCG- -5'
24810 5' -52.9 NC_005284.1 + 44485 0.66 0.845446
Target:  5'- -gCGCCuGCauGUCGAUcagacucgacgUCGCGCugcUCGCg -3'
miRNA:   3'- aaGUGG-CG--CAGCUA-----------AGCGCGua-AGCG- -5'
24810 5' -52.9 NC_005284.1 + 44110 0.77 0.266263
Target:  5'- -cCGCCGUGUCGA-UCGCGCccgcggCGCg -3'
miRNA:   3'- aaGUGGCGCAGCUaAGCGCGuaa---GCG- -5'
24810 5' -52.9 NC_005284.1 + 43530 0.66 0.845446
Target:  5'- cUUCGCCGCG-CGAgcCGCugccGCGUUgGUc -3'
miRNA:   3'- -AAGUGGCGCaGCUaaGCG----CGUAAgCG- -5'
24810 5' -52.9 NC_005284.1 + 43446 0.67 0.768564
Target:  5'- --gACCGCcUCGA--CGCGCAguugCGCg -3'
miRNA:   3'- aagUGGCGcAGCUaaGCGCGUaa--GCG- -5'
24810 5' -52.9 NC_005284.1 + 43217 0.74 0.405238
Target:  5'- -gCuCCGCGUCGAUcUGCGCAcugCGCu -3'
miRNA:   3'- aaGuGGCGCAGCUAaGCGCGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 40158 0.75 0.318305
Target:  5'- aUUCACgGCGUCGAgguagCGCGCGagCGUu -3'
miRNA:   3'- -AAGUGgCGCAGCUaa---GCGCGUaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 39526 0.66 0.836542
Target:  5'- cUCGCCGCGgcCGA--UGUGCuucaUCGCa -3'
miRNA:   3'- aAGUGGCGCa-GCUaaGCGCGua--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.