miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 5' -52.9 NC_005284.1 + 47292 0.67 0.768564
Target:  5'- gUCGCCGCGU-GAUcaaCGCGCGcgaGCu -3'
miRNA:   3'- aAGUGGCGCAgCUAa--GCGCGUaagCG- -5'
24810 5' -52.9 NC_005284.1 + 43446 0.67 0.768564
Target:  5'- --gACCGCcUCGA--CGCGCAguugCGCg -3'
miRNA:   3'- aagUGGCGcAGCUaaGCGCGUaa--GCG- -5'
24810 5' -52.9 NC_005284.1 + 48461 0.67 0.758178
Target:  5'- aUCGCgGCGaaaUCGAa-UGCGCAUacUCGCg -3'
miRNA:   3'- aAGUGgCGC---AGCUaaGCGCGUA--AGCG- -5'
24810 5' -52.9 NC_005284.1 + 54351 0.67 0.758178
Target:  5'- cUCGCCGgGUCGAgccccagcaUUGCGCcgaaacUCGCc -3'
miRNA:   3'- aAGUGGCgCAGCUa--------AGCGCGua----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 33216 0.67 0.758178
Target:  5'- -gCugCGCGUCGAacgccCGCGCGgccUGCu -3'
miRNA:   3'- aaGugGCGCAGCUaa---GCGCGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 31198 0.68 0.747658
Target:  5'- -cCGCCGCGUCGAUgaacCGCuCGaccCGCu -3'
miRNA:   3'- aaGUGGCGCAGCUAa---GCGcGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 47612 0.68 0.747658
Target:  5'- aUCACUGUGUCGca-CGCGCugaagcUUGCg -3'
miRNA:   3'- aAGUGGCGCAGCuaaGCGCGua----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 21627 0.68 0.747658
Target:  5'- -gCGCCGCGcUCGAcgccgagcagCGUGCGaUCGCc -3'
miRNA:   3'- aaGUGGCGC-AGCUaa--------GCGCGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 16115 0.68 0.743416
Target:  5'- uUUCGCCGCGUCGAcccaugcauaccgUCG-GUAaUUGCg -3'
miRNA:   3'- -AAGUGGCGCAGCUa------------AGCgCGUaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 31473 0.68 0.737017
Target:  5'- -cCGCCGUGcCGccggaaaagCGCGCAUUgCGCg -3'
miRNA:   3'- aaGUGGCGCaGCuaa------GCGCGUAA-GCG- -5'
24810 5' -52.9 NC_005284.1 + 21672 0.68 0.737017
Target:  5'- -cCGCCGCGUCGGcggUgGCcGCcgUCGa -3'
miRNA:   3'- aaGUGGCGCAGCUa--AgCG-CGuaAGCg -5'
24810 5' -52.9 NC_005284.1 + 9906 0.68 0.737017
Target:  5'- -gCGCCgaaGCGUCGc-UCGCGCucgCGCa -3'
miRNA:   3'- aaGUGG---CGCAGCuaAGCGCGuaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 47224 0.68 0.715419
Target:  5'- uUUCGCC-CGUCGca-CGCGCGgcaCGCa -3'
miRNA:   3'- -AAGUGGcGCAGCuaaGCGCGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 46782 0.68 0.693479
Target:  5'- aUUCGCCugcaugugcGCGUCGucacUCGCGCg--CGCg -3'
miRNA:   3'- -AAGUGG---------CGCAGCua--AGCGCGuaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 3515 0.68 0.693479
Target:  5'- -gCGCCGU-UCGAagcacguucUUCGCGCGUggcUCGCu -3'
miRNA:   3'- aaGUGGCGcAGCU---------AAGCGCGUA---AGCG- -5'
24810 5' -52.9 NC_005284.1 + 10492 0.68 0.693479
Target:  5'- uUUCuuCGaCGUagaGGUUCGCGCcgUCGUa -3'
miRNA:   3'- -AAGugGC-GCAg--CUAAGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 339 0.69 0.681302
Target:  5'- -gCACCGCGUCGGacuuccaUUugacggccucgUGCGCAUguugaUCGCa -3'
miRNA:   3'- aaGUGGCGCAGCU-------AA-----------GCGCGUA-----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 15800 0.69 0.671295
Target:  5'- -gCGuuGCGUCGccagCGCGCAgccCGCg -3'
miRNA:   3'- aaGUggCGCAGCuaa-GCGCGUaa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 1655 0.69 0.671295
Target:  5'- gUCACCGCGUCcuguUUCGCcgugcgagGCGUgauguagCGCg -3'
miRNA:   3'- aAGUGGCGCAGcu--AAGCG--------CGUAa------GCG- -5'
24810 5' -52.9 NC_005284.1 + 7917 0.69 0.671295
Target:  5'- aUCGCCgGCGcaagguccggUCGGUUgGCGauaAUUCGCg -3'
miRNA:   3'- aAGUGG-CGC----------AGCUAAgCGCg--UAAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.