miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 21626 0.67 0.418797
Target:  5'- -cGCGCCGcGCuCGaCGCCGAGCagCGuGCg -3'
miRNA:   3'- caUGCGGC-CG-GCaGCGGUUUGg-GC-CG- -5'
24815 5' -59.9 NC_005284.1 + 21808 0.66 0.465763
Target:  5'- -gGCaGCCGGUggCGaCGgCGuGCCCGGCg -3'
miRNA:   3'- caUG-CGGCCG--GCaGCgGUuUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 22001 0.66 0.485302
Target:  5'- -cGCGCaGGCCGaCGCa----CCGGCa -3'
miRNA:   3'- caUGCGgCCGGCaGCGguuugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 22116 0.67 0.446639
Target:  5'- gGUcCGCUGGCCccCGCCGAugCgGGa -3'
miRNA:   3'- -CAuGCGGCCGGcaGCGGUUugGgCCg -5'
24815 5' -59.9 NC_005284.1 + 24106 0.66 0.495217
Target:  5'- -cGCGUCGGCaagaaaGcCGCCGG--CCGGCu -3'
miRNA:   3'- caUGCGGCCGg-----CaGCGGUUugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 24328 0.69 0.318718
Target:  5'- -cACGCCGGCCGgcaGCaCAcgaaUCGGCg -3'
miRNA:   3'- caUGCGGCCGGCag-CG-GUuug-GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 24737 0.67 0.409753
Target:  5'- cGUGCGUcuuCGGCC--CGCUAcacccGACCCGGUc -3'
miRNA:   3'- -CAUGCG---GCCGGcaGCGGU-----UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 25081 0.75 0.133958
Target:  5'- -gACGCCGGCCGaccUCGCgAucgucaCCGGCa -3'
miRNA:   3'- caUGCGGCCGGC---AGCGgUuug---GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 26934 0.68 0.35813
Target:  5'- aUGCGCCGGgCGggCGUCG--UCUGGCg -3'
miRNA:   3'- cAUGCGGCCgGCa-GCGGUuuGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 27243 0.68 0.392035
Target:  5'- -aGCGCacgCGGCCaauaGCCGAACCCcGCg -3'
miRNA:   3'- caUGCG---GCCGGcag-CGGUUUGGGcCG- -5'
24815 5' -59.9 NC_005284.1 + 27688 0.67 0.409753
Target:  5'- -cGCGCgGGUCGcCGCUgccuGAuUCCGGCg -3'
miRNA:   3'- caUGCGgCCGGCaGCGG----UUuGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 27841 0.8 0.053966
Target:  5'- -aGCGCUGGgaGUCGCCAGacgacgcgccGCCCGGCg -3'
miRNA:   3'- caUGCGGCCggCAGCGGUU----------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 27871 0.67 0.417887
Target:  5'- -aACGCCgagGGCgaucccaucaUGUCGCgcaugcaUAAGCCCGGCg -3'
miRNA:   3'- caUGCGG---CCG----------GCAGCG-------GUUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 28511 0.66 0.485302
Target:  5'- uGUGCGCggCGGCgauuUGgagCGCCuucacgucauACCCGGCa -3'
miRNA:   3'- -CAUGCG--GCCG----GCa--GCGGuu--------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 28740 0.67 0.434446
Target:  5'- --uCGCgGGCUgaagucgauccgggGUCGCCGAcaucgagcCCCGGCa -3'
miRNA:   3'- cauGCGgCCGG--------------CAGCGGUUu-------GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 30068 0.68 0.366411
Target:  5'- -gACGCaCGGgCGUCGUUucGCCCuucGGCg -3'
miRNA:   3'- caUGCG-GCCgGCAGCGGuuUGGG---CCG- -5'
24815 5' -59.9 NC_005284.1 + 30236 0.66 0.505224
Target:  5'- -gGCGUCGGUC-UgGCCGGAuauugUCCGGCc -3'
miRNA:   3'- caUGCGGCCGGcAgCGGUUU-----GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 30466 0.67 0.435377
Target:  5'- uGUGCuGCCGGCCGgcgugaccaucaCGuCCGAACU-GGCg -3'
miRNA:   3'- -CAUG-CGGCCGGCa-----------GC-GGUUUGGgCCG- -5'
24815 5' -59.9 NC_005284.1 + 30658 0.73 0.165719
Target:  5'- uGUGCGUgCGGCCGUCGagCAGccGgCCGGCg -3'
miRNA:   3'- -CAUGCG-GCCGGCAGCg-GUU--UgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 31438 0.68 0.383365
Target:  5'- cGUGCGCCGcuGCgGcgCGCCGGGCCCc-- -3'
miRNA:   3'- -CAUGCGGC--CGgCa-GCGGUUUGGGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.