miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 10947 0.69 0.311237
Target:  5'- ---gGCCGGCCucGUCGCCGGACgagCGGa -3'
miRNA:   3'- caugCGGCCGG--CAGCGGUUUGg--GCCg -5'
24815 5' -59.9 NC_005284.1 + 12139 0.67 0.400832
Target:  5'- -cGCGCuCGGUgGUgCGgCAAGCgCGGCu -3'
miRNA:   3'- caUGCG-GCCGgCA-GCgGUUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 12439 0.66 0.464796
Target:  5'- -cGCGCCaguuucgaucgagGGCgGaUCGUCGAACCCcGCg -3'
miRNA:   3'- caUGCGG-------------CCGgC-AGCGGUUUGGGcCG- -5'
24815 5' -59.9 NC_005284.1 + 12884 0.74 0.149071
Target:  5'- uGUAUGUCGGCgCGaauccaaucaUCGCCGu-CCCGGCg -3'
miRNA:   3'- -CAUGCGGCCG-GC----------AGCGGUuuGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 13314 0.7 0.282654
Target:  5'- ----aCUGGCaCGUCGCCGAGCgCGGUc -3'
miRNA:   3'- caugcGGCCG-GCAGCGGUUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 14201 0.71 0.2499
Target:  5'- -aGgGgCGGCCGUCGCUGAccuUCCGGUa -3'
miRNA:   3'- caUgCgGCCGGCAGCGGUUu--GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 14957 0.69 0.314214
Target:  5'- -aACaUCGGCCG-CGCCAugcaaugcggcacgcGGCCCGGUu -3'
miRNA:   3'- caUGcGGCCGGCaGCGGU---------------UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 15115 0.66 0.505224
Target:  5'- aGUGCuGCgGGCuCGUCGUgaAGACCgagagCGGCg -3'
miRNA:   3'- -CAUG-CGgCCG-GCAGCGg-UUUGG-----GCCG- -5'
24815 5' -59.9 NC_005284.1 + 15473 0.71 0.237702
Target:  5'- cGUGCGCgacUGGUaucUCGCCGAGCgCGGCg -3'
miRNA:   3'- -CAUGCG---GCCGgc-AGCGGUUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 15959 0.73 0.170134
Target:  5'- -gACGCCGGCCcacguUCGCCGuguucAACggCCGGCg -3'
miRNA:   3'- caUGCGGCCGGc----AGCGGU-----UUG--GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 16049 0.66 0.465763
Target:  5'- uUGCGCCGGUaauCGUCGgCAguaAGCgCGGg -3'
miRNA:   3'- cAUGCGGCCG---GCAGCgGU---UUGgGCCg -5'
24815 5' -59.9 NC_005284.1 + 16058 0.67 0.437243
Target:  5'- -cAUGCCGuCCGgCGCCAugcagcgcauuGAgCCGGCa -3'
miRNA:   3'- caUGCGGCcGGCaGCGGU-----------UUgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 16207 0.69 0.334082
Target:  5'- cGUGCGCuCGGCCGaacgGCCGucucGCUCGGg -3'
miRNA:   3'- -CAUGCG-GCCGGCag--CGGUu---UGGGCCg -5'
24815 5' -59.9 NC_005284.1 + 16670 0.66 0.465763
Target:  5'- ----uCCGGCCGUCGagcgUGAGgCCGGCg -3'
miRNA:   3'- caugcGGCCGGCAGCg---GUUUgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 17506 0.73 0.188862
Target:  5'- -cGCGUCGGCCGauaUGCCGuccGAUCCGGUc -3'
miRNA:   3'- caUGCGGCCGGCa--GCGGU---UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 17837 0.74 0.14133
Target:  5'- uGUGCGCCGggacaggugaucGCCGUUGCCGAcccaaagaaGgCCGGCc -3'
miRNA:   3'- -CAUGCGGC------------CGGCAGCGGUU---------UgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 18477 0.68 0.392035
Target:  5'- -cGCGCgGGUgCG-CGCCGAgaacgcGCUCGGCg -3'
miRNA:   3'- caUGCGgCCG-GCaGCGGUU------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 18801 0.7 0.2896
Target:  5'- -cACGuCCGGCaaCGUCggGCCGugguuCCCGGCg -3'
miRNA:   3'- caUGC-GGCCG--GCAG--CGGUuu---GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 20834 0.66 0.456147
Target:  5'- -aGCGCCGGCCGa---CGAGCgggCGGCg -3'
miRNA:   3'- caUGCGGCCGGCagcgGUUUGg--GCCG- -5'
24815 5' -59.9 NC_005284.1 + 21424 0.66 0.502213
Target:  5'- -aGCGCCGGCCGacgaacgggcggugUCGUUcgAGGCgUGGUg -3'
miRNA:   3'- caUGCGGCCGGC--------------AGCGG--UUUGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.