miRNA display CGI


Results 21 - 40 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 32516 0.73 0.188862
Target:  5'- -cGCGCUGGCUGuUCGUCAGGCUcgccacccucgCGGCg -3'
miRNA:   3'- caUGCGGCCGGC-AGCGGUUUGG-----------GCCG- -5'
24815 5' -59.9 NC_005284.1 + 44661 0.72 0.198891
Target:  5'- -aGCGCCGucugcGCCGUCGCCGcGCUuuCGGUc -3'
miRNA:   3'- caUGCGGC-----CGGCAGCGGUuUGG--GCCG- -5'
24815 5' -59.9 NC_005284.1 + 42556 0.72 0.204077
Target:  5'- cUGCGCCGggauGCUGUCGCuCGuggacguGCCCGGUc -3'
miRNA:   3'- cAUGCGGC----CGGCAGCG-GUu------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 10547 0.72 0.20938
Target:  5'- --uCGCCGGCCuggaUCGCCucaagacgucGAACCuCGGCg -3'
miRNA:   3'- cauGCGGCCGGc---AGCGG----------UUUGG-GCCG- -5'
24815 5' -59.9 NC_005284.1 + 8742 0.71 0.226006
Target:  5'- -aGCGCUuGCCGUCgagGCCugcucgacGCCCGGCg -3'
miRNA:   3'- caUGCGGcCGGCAG---CGGuu------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 15473 0.71 0.237702
Target:  5'- cGUGCGCgacUGGUaucUCGCCGAGCgCGGCg -3'
miRNA:   3'- -CAUGCG---GCCGgc-AGCGGUUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 49849 0.71 0.243738
Target:  5'- cGUACcggGCaCGGCCGUCGauauacgauugCAGugCCGGCg -3'
miRNA:   3'- -CAUG---CG-GCCGGCAGCg----------GUUugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 14201 0.71 0.2499
Target:  5'- -aGgGgCGGCCGUCGCUGAccuUCCGGUa -3'
miRNA:   3'- caUgCgGCCGGCAGCGGUUu--GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 44562 0.7 0.262611
Target:  5'- -aGCGCCaccguGCCcacgGUCGCCAGAauuCCCGGUa -3'
miRNA:   3'- caUGCGGc----CGG----CAGCGGUUU---GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 907 0.7 0.262611
Target:  5'- -gACGaCGGCCGcCGCau--CCCGGCc -3'
miRNA:   3'- caUGCgGCCGGCaGCGguuuGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 7260 0.7 0.275841
Target:  5'- -aGCGCaCGGUCGgcaccucgaCGCCGAACacgaCGGCg -3'
miRNA:   3'- caUGCG-GCCGGCa--------GCGGUUUGg---GCCG- -5'
24815 5' -59.9 NC_005284.1 + 4920 0.7 0.275841
Target:  5'- aUGCGCCGGCacugcaauCGUauaucgacgGCCGuGCCCGGUa -3'
miRNA:   3'- cAUGCGGCCG--------GCAg--------CGGUuUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 37286 0.7 0.275841
Target:  5'- -gACGgcauaUCGGCCGacgCGaCCAccGACCCGGCg -3'
miRNA:   3'- caUGC-----GGCCGGCa--GC-GGU--UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 53571 0.7 0.275841
Target:  5'- cGgcUGCCGGCgCG-CGCCcAugCCGGUc -3'
miRNA:   3'- -CauGCGGCCG-GCaGCGGuUugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 13314 0.7 0.282654
Target:  5'- ----aCUGGCaCGUCGCCGAGCgCGGUc -3'
miRNA:   3'- caugcGGCCG-GCAGCGGUUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 37789 0.7 0.282654
Target:  5'- -cGCGUCGGCgauCGUCGCCGuguGCgcguUCGGCg -3'
miRNA:   3'- caUGCGGCCG---GCAGCGGUu--UG----GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 18801 0.7 0.2896
Target:  5'- -cACGuCCGGCaaCGUCggGCCGugguuCCCGGCg -3'
miRNA:   3'- caUGC-GGCCG--GCAG--CGGUuu---GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 50824 0.7 0.2896
Target:  5'- aGUGCGauGGCCGUUggGUgGGGCCgGGCg -3'
miRNA:   3'- -CAUGCggCCGGCAG--CGgUUUGGgCCG- -5'
24815 5' -59.9 NC_005284.1 + 46033 0.7 0.2896
Target:  5'- uGU-CGCCGGgCGUCGagCAGGCCucgaCGGCa -3'
miRNA:   3'- -CAuGCGGCCgGCAGCg-GUUUGG----GCCG- -5'
24815 5' -59.9 NC_005284.1 + 7980 0.69 0.303891
Target:  5'- -gGCGCaagaGGUCGagaaaucCGCCGccuGCCCGGCa -3'
miRNA:   3'- caUGCGg---CCGGCa------GCGGUu--UGGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.