miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 48119 1.12 0.000251
Target:  5'- cGUACGCCGGCCGUCGCCAAACCCGGCg -3'
miRNA:   3'- -CAUGCGGCCGGCAGCGGUUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 27841 0.8 0.053966
Target:  5'- -aGCGCUGGgaGUCGCCAGacgacgcgccGCCCGGCg -3'
miRNA:   3'- caUGCGGCCggCAGCGGUU----------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 33286 0.78 0.081982
Target:  5'- -aGCGCCGGCCGccaUGCCAAGCagcgCGGCc -3'
miRNA:   3'- caUGCGGCCGGCa--GCGGUUUGg---GCCG- -5'
24815 5' -59.9 NC_005284.1 + 32974 0.77 0.096713
Target:  5'- -aGCGCCGggcacGCCGUCGCCA---CCGGCu -3'
miRNA:   3'- caUGCGGC-----CGGCAGCGGUuugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 46146 0.76 0.116106
Target:  5'- uGUGCGCCcGCCGUCGCgCAccgcauugaaauacGAgCCGGCc -3'
miRNA:   3'- -CAUGCGGcCGGCAGCG-GU--------------UUgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 38814 0.75 0.120268
Target:  5'- uUGCGCCGGCCGUUGaacacggCGAACgugaggCCGGCg -3'
miRNA:   3'- cAUGCGGCCGGCAGCg------GUUUG------GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 42116 0.75 0.123563
Target:  5'- --cCGCUGgguguaGCCGUCGCCGAACUgGGCu -3'
miRNA:   3'- cauGCGGC------CGGCAGCGGUUUGGgCCG- -5'
24815 5' -59.9 NC_005284.1 + 25081 0.75 0.133958
Target:  5'- -gACGCCGGCCGaccUCGCgAucgucaCCGGCa -3'
miRNA:   3'- caUGCGGCCGGC---AGCGgUuug---GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 43193 0.74 0.14133
Target:  5'- -gACGCuCGGCCGcguagUCGCCGAGCUCcGCg -3'
miRNA:   3'- caUGCG-GCCGGC-----AGCGGUUUGGGcCG- -5'
24815 5' -59.9 NC_005284.1 + 17837 0.74 0.14133
Target:  5'- uGUGCGCCGggacaggugaucGCCGUUGCCGAcccaaagaaGgCCGGCc -3'
miRNA:   3'- -CAUGCGGC------------CGGCAGCGGUU---------UgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 47163 0.74 0.145153
Target:  5'- uGUACGaCCGGCgCGUacaucaggCGCCGAACCCGa- -3'
miRNA:   3'- -CAUGC-GGCCG-GCA--------GCGGUUUGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 12884 0.74 0.149071
Target:  5'- uGUAUGUCGGCgCGaauccaaucaUCGCCGu-CCCGGCg -3'
miRNA:   3'- -CAUGCGGCCG-GC----------AGCGGUuuGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 30658 0.73 0.165719
Target:  5'- uGUGCGUgCGGCCGUCGagCAGccGgCCGGCg -3'
miRNA:   3'- -CAUGCG-GCCGGCAGCg-GUU--UgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 15959 0.73 0.170134
Target:  5'- -gACGCCGGCCcacguUCGCCGuguucAACggCCGGCg -3'
miRNA:   3'- caUGCGGCCGGc----AGCGGU-----UUG--GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 7052 0.73 0.174654
Target:  5'- -cGCGCC-GCCGUacCGCCGAGCaCGGCc -3'
miRNA:   3'- caUGCGGcCGGCA--GCGGUUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 51588 0.73 0.179281
Target:  5'- cGUugGCUGgaGCCGUCGUUc--CCCGGCa -3'
miRNA:   3'- -CAugCGGC--CGGCAGCGGuuuGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 36585 0.73 0.179281
Target:  5'- uGUGCGCCGucGUCGaUCGCCGcguacuucCCCGGCu -3'
miRNA:   3'- -CAUGCGGC--CGGC-AGCGGUuu------GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 36283 0.73 0.184017
Target:  5'- cGUACGCCGGaaucgaCGUcaCGCCGAGCgcguucUCGGCg -3'
miRNA:   3'- -CAUGCGGCCg-----GCA--GCGGUUUG------GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 17506 0.73 0.188862
Target:  5'- -cGCGUCGGCCGauaUGCCGuccGAUCCGGUc -3'
miRNA:   3'- caUGCGGCCGGCa--GCGGU---UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 35963 0.73 0.188862
Target:  5'- -cACGcCCGGCCccuUCGCCGggAACCaCGGCc -3'
miRNA:   3'- caUGC-GGCCGGc--AGCGGU--UUGG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.