miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 49133 0.69 0.341964
Target:  5'- aUGCGUuuuaaGGCgcgCGUCGUCAAggcggacggGCCCGGCg -3'
miRNA:   3'- cAUGCGg----CCG---GCAGCGGUU---------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 18801 0.7 0.2896
Target:  5'- -cACGuCCGGCaaCGUCggGCCGugguuCCCGGCg -3'
miRNA:   3'- caUGC-GGCCG--GCAG--CGGUuu---GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 46033 0.7 0.2896
Target:  5'- uGU-CGCCGGgCGUCGagCAGGCCucgaCGGCa -3'
miRNA:   3'- -CAuGCGGCCgGCAGCg-GUUUGG----GCCG- -5'
24815 5' -59.9 NC_005284.1 + 50824 0.7 0.2896
Target:  5'- aGUGCGauGGCCGUUggGUgGGGCCgGGCg -3'
miRNA:   3'- -CAUGCggCCGGCAG--CGgUUUGGgCCG- -5'
24815 5' -59.9 NC_005284.1 + 10947 0.69 0.311237
Target:  5'- ---gGCCGGCCucGUCGCCGGACgagCGGa -3'
miRNA:   3'- caugCGGCCGG--CAGCGGUUUGg--GCCg -5'
24815 5' -59.9 NC_005284.1 + 54722 0.69 0.318718
Target:  5'- --cCGUCcGUCGUUGCCc-GCCCGGCg -3'
miRNA:   3'- cauGCGGcCGGCAGCGGuuUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 38577 0.69 0.334082
Target:  5'- -aGCGagaCGGCCGUUcgGCCGAgcgcACgCGGCg -3'
miRNA:   3'- caUGCg--GCCGGCAG--CGGUU----UGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 45552 0.69 0.34117
Target:  5'- cUAUGCCgccgcguGGCgCGUCGCCcgcgcACUCGGCu -3'
miRNA:   3'- cAUGCGG-------CCG-GCAGCGGuu---UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 48066 0.69 0.341964
Target:  5'- gGUGCGCUGcGCauuacgCGCCG-GCCCGGUc -3'
miRNA:   3'- -CAUGCGGC-CGgca---GCGGUuUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 13314 0.7 0.282654
Target:  5'- ----aCUGGCaCGUCGCCGAGCgCGGUc -3'
miRNA:   3'- caugcGGCCG-GCAGCGGUUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 4920 0.7 0.275841
Target:  5'- aUGCGCCGGCacugcaauCGUauaucgacgGCCGuGCCCGGUa -3'
miRNA:   3'- cAUGCGGCCG--------GCAg--------CGGUuUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 14201 0.71 0.2499
Target:  5'- -aGgGgCGGCCGUCGCUGAccuUCCGGUa -3'
miRNA:   3'- caUgCgGCCGGCAGCGGUUu--GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 47163 0.74 0.145153
Target:  5'- uGUACGaCCGGCgCGUacaucaggCGCCGAACCCGa- -3'
miRNA:   3'- -CAUGC-GGCCG-GCA--------GCGGUUUGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 30658 0.73 0.165719
Target:  5'- uGUGCGUgCGGCCGUCGagCAGccGgCCGGCg -3'
miRNA:   3'- -CAUGCG-GCCGGCAGCg-GUU--UgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 15959 0.73 0.170134
Target:  5'- -gACGCCGGCCcacguUCGCCGuguucAACggCCGGCg -3'
miRNA:   3'- caUGCGGCCGGc----AGCGGU-----UUG--GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 51588 0.73 0.179281
Target:  5'- cGUugGCUGgaGCCGUCGUUc--CCCGGCa -3'
miRNA:   3'- -CAugCGGC--CGGCAGCGGuuuGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 17506 0.73 0.188862
Target:  5'- -cGCGUCGGCCGauaUGCCGuccGAUCCGGUc -3'
miRNA:   3'- caUGCGGCCGGCa--GCGGU---UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 32516 0.73 0.188862
Target:  5'- -cGCGCUGGCUGuUCGUCAGGCUcgccacccucgCGGCg -3'
miRNA:   3'- caUGCGGCCGGC-AGCGGUUUGG-----------GCCG- -5'
24815 5' -59.9 NC_005284.1 + 10547 0.72 0.20938
Target:  5'- --uCGCCGGCCuggaUCGCCucaagacgucGAACCuCGGCg -3'
miRNA:   3'- cauGCGGCCGGc---AGCGG----------UUUGG-GCCG- -5'
24815 5' -59.9 NC_005284.1 + 15473 0.71 0.237702
Target:  5'- cGUGCGCgacUGGUaucUCGCCGAGCgCGGCg -3'
miRNA:   3'- -CAUGCG---GCCGgc-AGCGGUUUGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.