Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 4487 | 0.66 | 0.456147 |
Target: 5'- -cGCGgCGGCgGUagCGCCGAACUCGa- -3' miRNA: 3'- caUGCgGCCGgCA--GCGGUUUGGGCcg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 21424 | 0.66 | 0.502213 |
Target: 5'- -aGCGCCGGCCGacgaacgggcggugUCGUUcgAGGCgUGGUg -3' miRNA: 3'- caUGCGGCCGGC--------------AGCGG--UUUGgGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 651 | 0.66 | 0.505224 |
Target: 5'- aGUugGCgGGCCa--GCCcGGCuaCCGGCu -3' miRNA: 3'- -CAugCGgCCGGcagCGGuUUG--GGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 15115 | 0.66 | 0.505224 |
Target: 5'- aGUGCuGCgGGCuCGUCGUgaAGACCgagagCGGCg -3' miRNA: 3'- -CAUG-CGgCCG-GCAGCGg-UUUGG-----GCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 28511 | 0.66 | 0.485302 |
Target: 5'- uGUGCGCggCGGCgauuUGgagCGCCuucacgucauACCCGGCa -3' miRNA: 3'- -CAUGCG--GCCG----GCa--GCGGuu--------UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 46439 | 0.66 | 0.485302 |
Target: 5'- -aACGaaCCGaucGCCGUCGCCGAAUgccgCCGaGCg -3' miRNA: 3'- caUGC--GGC---CGGCAGCGGUUUG----GGC-CG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 3721 | 0.66 | 0.505224 |
Target: 5'- -aGCgGCCGGgCGUUGCCGGuUCUguGGCa -3' miRNA: 3'- caUG-CGGCCgGCAGCGGUUuGGG--CCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 9134 | 0.66 | 0.505224 |
Target: 5'- --uUGCCGGgUGUCGCgGAugcuaucgcGCgCGGCa -3' miRNA: 3'- cauGCGGCCgGCAGCGgUU---------UGgGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 49344 | 0.66 | 0.482346 |
Target: 5'- cGUGCGCgacgaccgaacuauCGGUCGcagcuUCGCCGAGCgCGaGCu -3' miRNA: 3'- -CAUGCG--------------GCCGGC-----AGCGGUUUGgGC-CG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 30236 | 0.66 | 0.505224 |
Target: 5'- -gGCGUCGGUC-UgGCCGGAuauugUCCGGCc -3' miRNA: 3'- caUGCGGCCGGcAgCGGUUU-----GGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 42273 | 0.66 | 0.475482 |
Target: 5'- uGUGCGCCGGUCGucgaggUCGUCAggAGCUUuucgcgugaGGCg -3' miRNA: 3'- -CAUGCGGCCGGC------AGCGGU--UUGGG---------CCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 12439 | 0.66 | 0.464796 |
Target: 5'- -cGCGCCaguuucgaucgagGGCgGaUCGUCGAACCCcGCg -3' miRNA: 3'- caUGCGG-------------CCGgC-AGCGGUUUGGGcCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 16670 | 0.66 | 0.465763 |
Target: 5'- ----uCCGGCCGUCGagcgUGAGgCCGGCg -3' miRNA: 3'- caugcGGCCGGCAGCg---GUUUgGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 47278 | 0.66 | 0.464796 |
Target: 5'- cGUGauCGaCGGCCGUCGCCGcgugaucAACgCGcGCg -3' miRNA: 3'- -CAU--GCgGCCGGCAGCGGU-------UUGgGC-CG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 37381 | 0.66 | 0.465763 |
Target: 5'- -gACGCCgcGGUCGUCGCCGuAGCgUuGCa -3' miRNA: 3'- caUGCGG--CCGGCAGCGGU-UUGgGcCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 21808 | 0.66 | 0.465763 |
Target: 5'- -gGCaGCCGGUggCGaCGgCGuGCCCGGCg -3' miRNA: 3'- caUG-CGGCCG--GCaGCgGUuUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 46884 | 0.66 | 0.456147 |
Target: 5'- uUGCGCCGGCga---UUGAACCCGGCu -3' miRNA: 3'- cAUGCGGCCGgcagcGGUUUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 16049 | 0.66 | 0.465763 |
Target: 5'- uUGCGCCGGUaauCGUCGgCAguaAGCgCGGg -3' miRNA: 3'- cAUGCGGCCG---GCAGCgGU---UUGgGCCg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 37422 | 0.66 | 0.505224 |
Target: 5'- cGUA-GCCGGCCGggaCGUUAucgcAgCCGGCc -3' miRNA: 3'- -CAUgCGGCCGGCa--GCGGUu---UgGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 41597 | 0.66 | 0.485302 |
Target: 5'- cGUACGCgcgcgaGGCCG-CGCCGAGUgCGaGCu -3' miRNA: 3'- -CAUGCGg-----CCGGCaGCGGUUUGgGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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