miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 433 0.67 0.446639
Target:  5'- -gGCGCaauGCUGggGCUcGACCCGGCg -3'
miRNA:   3'- caUGCGgc-CGGCagCGGuUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 651 0.66 0.505224
Target:  5'- aGUugGCgGGCCa--GCCcGGCuaCCGGCu -3'
miRNA:   3'- -CAugCGgCCGGcagCGGuUUG--GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 907 0.7 0.262611
Target:  5'- -gACGaCGGCCGcCGCau--CCCGGCc -3'
miRNA:   3'- caUGCgGCCGGCaGCGguuuGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 965 0.68 0.353225
Target:  5'- uGUACGCCGGCgCGaCGacugaaaagCAGgccuggaggucuuucGCCCGGCg -3'
miRNA:   3'- -CAUGCGGCCG-GCaGCg--------GUU---------------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 1016 0.67 0.437243
Target:  5'- -aGCaGCCGGCaucagcaaacCGUaucucaGCCAAaucgaaACCCGGCa -3'
miRNA:   3'- caUG-CGGCCG----------GCAg-----CGGUU------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 2043 0.67 0.446639
Target:  5'- --cUGCCGGCUGcuuaGCCAca-CCGGCc -3'
miRNA:   3'- cauGCGGCCGGCag--CGGUuugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 3701 0.66 0.475482
Target:  5'- --cCGCauuucgauuUGGCCGUCGUCGAGCUCGa- -3'
miRNA:   3'- cauGCG---------GCCGGCAGCGGUUUGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 3721 0.66 0.505224
Target:  5'- -aGCgGCCGGgCGUUGCCGGuUCUguGGCa -3'
miRNA:   3'- caUG-CGGCCgGCAGCGGUUuGGG--CCG- -5'
24815 5' -59.9 NC_005284.1 + 4487 0.66 0.456147
Target:  5'- -cGCGgCGGCgGUagCGCCGAACUCGa- -3'
miRNA:   3'- caUGCgGCCGgCA--GCGGUUUGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 4920 0.7 0.275841
Target:  5'- aUGCGCCGGCacugcaauCGUauaucgacgGCCGuGCCCGGUa -3'
miRNA:   3'- cAUGCGGCCG--------GCAg--------CGGUuUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 6948 0.66 0.456147
Target:  5'- uGUGCGCUuucCgCGUCGUCAAugCCGaGCa -3'
miRNA:   3'- -CAUGCGGcc-G-GCAGCGGUUugGGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 7052 0.73 0.174654
Target:  5'- -cGCGCC-GCCGUacCGCCGAGCaCGGCc -3'
miRNA:   3'- caUGCGGcCGGCA--GCGGUUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 7260 0.7 0.275841
Target:  5'- -aGCGCaCGGUCGgcaccucgaCGCCGAACacgaCGGCg -3'
miRNA:   3'- caUGCG-GCCGGCa--------GCGGUUUGg---GCCG- -5'
24815 5' -59.9 NC_005284.1 + 7714 0.67 0.409753
Target:  5'- gGUGCGCCGaagcucguGCCGcCGCCGG---CGGCg -3'
miRNA:   3'- -CAUGCGGC--------CGGCaGCGGUUuggGCCG- -5'
24815 5' -59.9 NC_005284.1 + 7980 0.69 0.303891
Target:  5'- -gGCGCaagaGGUCGagaaaucCGCCGccuGCCCGGCa -3'
miRNA:   3'- caUGCGg---CCGGCa------GCGGUu--UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 8299 0.66 0.462867
Target:  5'- -gGCGUCGGCCaUgcacgagcagcuaaCGCCAGcgucggacGCUCGGCg -3'
miRNA:   3'- caUGCGGCCGGcA--------------GCGGUU--------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 8742 0.71 0.226006
Target:  5'- -aGCGCUuGCCGUCgagGCCugcucgacGCCCGGCg -3'
miRNA:   3'- caUGCGGcCGGCAG---CGGuu------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 9134 0.66 0.505224
Target:  5'- --uUGCCGGgUGUCGCgGAugcuaucgcGCgCGGCa -3'
miRNA:   3'- cauGCGGCCgGCAGCGgUU---------UGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 9228 0.66 0.465763
Target:  5'- aGUGCGCgGGCgaCG-CGCC--ACgCGGCg -3'
miRNA:   3'- -CAUGCGgCCG--GCaGCGGuuUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 10547 0.72 0.20938
Target:  5'- --uCGCCGGCCuggaUCGCCucaagacgucGAACCuCGGCg -3'
miRNA:   3'- cauGCGGCCGGc---AGCGG----------UUUGG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.