miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 54722 0.69 0.318718
Target:  5'- --cCGUCcGUCGUUGCCc-GCCCGGCg -3'
miRNA:   3'- cauGCGGcCGGCAGCGGuuUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 54711 0.67 0.400832
Target:  5'- cGUGcCGUCGGCUuggGUuuucUGCCccGGCCCGGCa -3'
miRNA:   3'- -CAU-GCGGCCGG---CA----GCGGu-UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 53892 0.67 0.409753
Target:  5'- ---gGgCGGCCGUCGUCGcuuGCCUuGGCc -3'
miRNA:   3'- caugCgGCCGGCAGCGGUu--UGGG-CCG- -5'
24815 5' -59.9 NC_005284.1 + 53571 0.7 0.275841
Target:  5'- cGgcUGCCGGCgCG-CGCCcAugCCGGUc -3'
miRNA:   3'- -CauGCGGCCG-GCaGCGGuUugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 51782 0.68 0.366411
Target:  5'- gGUAgGCCGGCUuaCGCCAuauuucgaagaGACUgGGCu -3'
miRNA:   3'- -CAUgCGGCCGGcaGCGGU-----------UUGGgCCG- -5'
24815 5' -59.9 NC_005284.1 + 51588 0.73 0.179281
Target:  5'- cGUugGCUGgaGCCGUCGUUc--CCCGGCa -3'
miRNA:   3'- -CAugCGGC--CGGCAGCGGuuuGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 50824 0.7 0.2896
Target:  5'- aGUGCGauGGCCGUUggGUgGGGCCgGGCg -3'
miRNA:   3'- -CAUGCggCCGGCAG--CGgUUUGGgCCG- -5'
24815 5' -59.9 NC_005284.1 + 50297 0.68 0.349981
Target:  5'- -aGCgGCCGaCCGUCGCCGAggguucgaaguAUuuGGCg -3'
miRNA:   3'- caUG-CGGCcGGCAGCGGUU-----------UGggCCG- -5'
24815 5' -59.9 NC_005284.1 + 49849 0.71 0.243738
Target:  5'- cGUACcggGCaCGGCCGUCGauauacgauugCAGugCCGGCg -3'
miRNA:   3'- -CAUG---CG-GCCGGCAGCg----------GUUugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 49344 0.66 0.482346
Target:  5'- cGUGCGCgacgaccgaacuauCGGUCGcagcuUCGCCGAGCgCGaGCu -3'
miRNA:   3'- -CAUGCG--------------GCCGGC-----AGCGGUUUGgGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 49133 0.69 0.341964
Target:  5'- aUGCGUuuuaaGGCgcgCGUCGUCAAggcggacggGCCCGGCg -3'
miRNA:   3'- cAUGCGg----CCG---GCAGCGGUU---------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 48840 0.68 0.36976
Target:  5'- -gGCGCCaGCCGUggcguccgcaacugcCGCCugcauCUCGGCg -3'
miRNA:   3'- caUGCGGcCGGCA---------------GCGGuuu--GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 48119 1.12 0.000251
Target:  5'- cGUACGCCGGCCGUCGCCAAACCCGGCg -3'
miRNA:   3'- -CAUGCGGCCGGCAGCGGUUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 48066 0.69 0.341964
Target:  5'- gGUGCGCUGcGCauuacgCGCCG-GCCCGGUc -3'
miRNA:   3'- -CAUGCGGC-CGgca---GCGGUuUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 47723 0.67 0.427961
Target:  5'- cGUGCGCagaaGGCCGU-GCUcgGCgguaCGGCg -3'
miRNA:   3'- -CAUGCGg---CCGGCAgCGGuuUGg---GCCG- -5'
24815 5' -59.9 NC_005284.1 + 47278 0.66 0.464796
Target:  5'- cGUGauCGaCGGCCGUCGCCGcgugaucAACgCGcGCg -3'
miRNA:   3'- -CAU--GCgGCCGGCAGCGGU-------UUGgGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 47163 0.74 0.145153
Target:  5'- uGUACGaCCGGCgCGUacaucaggCGCCGAACCCGa- -3'
miRNA:   3'- -CAUGC-GGCCG-GCA--------GCGGUUUGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 47108 0.67 0.437243
Target:  5'- -cACGCUGuaCGUCGCCGAaaucaGCCCa-- -3'
miRNA:   3'- caUGCGGCcgGCAGCGGUU-----UGGGccg -5'
24815 5' -59.9 NC_005284.1 + 46884 0.66 0.456147
Target:  5'- uUGCGCCGGCga---UUGAACCCGGCu -3'
miRNA:   3'- cAUGCGGCCGgcagcGGUUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 46832 0.69 0.311237
Target:  5'- --cCGCCGuuucGUCGUCGCCcuccguuacCCCGGCg -3'
miRNA:   3'- cauGCGGC----CGGCAGCGGuuu------GGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.