miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 30236 0.66 0.505224
Target:  5'- -gGCGUCGGUC-UgGCCGGAuauugUCCGGCc -3'
miRNA:   3'- caUGCGGCCGGcAgCGGUUU-----GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 33115 0.66 0.456147
Target:  5'- -gACGgCGGCCacCGCCG-ACgCGGCg -3'
miRNA:   3'- caUGCgGCCGGcaGCGGUuUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 22116 0.67 0.446639
Target:  5'- gGUcCGCUGGCCccCGCCGAugCgGGa -3'
miRNA:   3'- -CAuGCGGCCGGcaGCGGUUugGgCCg -5'
24815 5' -59.9 NC_005284.1 + 48119 1.12 0.000251
Target:  5'- cGUACGCCGGCCGUCGCCAAACCCGGCg -3'
miRNA:   3'- -CAUGCGGCCGGCAGCGGUUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 44342 0.66 0.495217
Target:  5'- uUGCGCCGcCCGcgUCGCCAAAuUCCGa- -3'
miRNA:   3'- cAUGCGGCcGGC--AGCGGUUU-GGGCcg -5'
24815 5' -59.9 NC_005284.1 + 36909 0.66 0.485302
Target:  5'- aUGCGCCcGCCGau-CCGGGgCCGGCc -3'
miRNA:   3'- cAUGCGGcCGGCagcGGUUUgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 46351 0.66 0.475482
Target:  5'- cGU-CGCgGGC--UCGCCGGACCaucuCGGCa -3'
miRNA:   3'- -CAuGCGgCCGgcAGCGGUUUGG----GCCG- -5'
24815 5' -59.9 NC_005284.1 + 36101 0.66 0.475482
Target:  5'- cUugGUCGcGUCGUCGC--GAUUCGGCg -3'
miRNA:   3'- cAugCGGC-CGGCAGCGguUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 9228 0.66 0.465763
Target:  5'- aGUGCGCgGGCgaCG-CGCC--ACgCGGCg -3'
miRNA:   3'- -CAUGCGgCCG--GCaGCGGuuUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 6948 0.66 0.456147
Target:  5'- uGUGCGCUuucCgCGUCGUCAAugCCGaGCa -3'
miRNA:   3'- -CAUGCGGcc-G-GCAGCGGUUugGGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 38115 0.66 0.465763
Target:  5'- -gACGCCGGCCucaCGCUcgacggccggaAAACCCGa- -3'
miRNA:   3'- caUGCGGCCGGca-GCGG-----------UUUGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 45289 0.66 0.475482
Target:  5'- -gGCGCCGacccacGCUGUCGCC--GCCUGcGUc -3'
miRNA:   3'- caUGCGGC------CGGCAGCGGuuUGGGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 651 0.66 0.505224
Target:  5'- aGUugGCgGGCCa--GCCcGGCuaCCGGCu -3'
miRNA:   3'- -CAugCGgCCGGcagCGGuUUG--GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 8299 0.66 0.462867
Target:  5'- -gGCGUCGGCCaUgcacgagcagcuaaCGCCAGcgucggacGCUCGGCg -3'
miRNA:   3'- caUGCGGCCGGcA--------------GCGGUU--------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 21424 0.66 0.502213
Target:  5'- -aGCGCCGGCCGacgaacgggcggugUCGUUcgAGGCgUGGUg -3'
miRNA:   3'- caUGCGGCCGGC--------------AGCGG--UUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 3701 0.66 0.475482
Target:  5'- --cCGCauuucgauuUGGCCGUCGUCGAGCUCGa- -3'
miRNA:   3'- cauGCG---------GCCGGCAGCGGUUUGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 20834 0.66 0.456147
Target:  5'- -aGCGCCGGCCGa---CGAGCgggCGGCg -3'
miRNA:   3'- caUGCGGCCGGCagcgGUUUGg--GCCG- -5'
24815 5' -59.9 NC_005284.1 + 32775 0.66 0.456147
Target:  5'- -cACGCCGGUCGcccuguuucUCGUUAcuucuguucgcAGCCCGGa -3'
miRNA:   3'- caUGCGGCCGGC---------AGCGGU-----------UUGGGCCg -5'
24815 5' -59.9 NC_005284.1 + 24106 0.66 0.495217
Target:  5'- -cGCGUCGGCaagaaaGcCGCCGG--CCGGCu -3'
miRNA:   3'- caUGCGGCCGg-----CaGCGGUUugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 22001 0.66 0.485302
Target:  5'- -cGCGCaGGCCGaCGCa----CCGGCa -3'
miRNA:   3'- caUGCGgCCGGCaGCGguuugGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.