miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 47108 0.67 0.437243
Target:  5'- -cACGCUGuaCGUCGCCGAaaucaGCCCa-- -3'
miRNA:   3'- caUGCGGCcgGCAGCGGUU-----UGGGccg -5'
24815 5' -59.9 NC_005284.1 + 22116 0.67 0.446639
Target:  5'- gGUcCGCUGGCCccCGCCGAugCgGGa -3'
miRNA:   3'- -CAuGCGGCCGGcaGCGGUUugGgCCg -5'
24815 5' -59.9 NC_005284.1 + 45289 0.66 0.475482
Target:  5'- -gGCGCCGacccacGCUGUCGCC--GCCUGcGUc -3'
miRNA:   3'- caUGCGGC------CGGCAGCGGuuUGGGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 24106 0.66 0.495217
Target:  5'- -cGCGUCGGCaagaaaGcCGCCGG--CCGGCu -3'
miRNA:   3'- caUGCGGCCGg-----CaGCGGUUugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 24328 0.69 0.318718
Target:  5'- -cACGCCGGCCGgcaGCaCAcgaaUCGGCg -3'
miRNA:   3'- caUGCGGCCGGCag-CG-GUuug-GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 54711 0.67 0.400832
Target:  5'- cGUGcCGUCGGCUuggGUuuucUGCCccGGCCCGGCa -3'
miRNA:   3'- -CAU-GCGGCCGG---CA----GCGGu-UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 33115 0.66 0.456147
Target:  5'- -gACGgCGGCCacCGCCG-ACgCGGCg -3'
miRNA:   3'- caUGCgGCCGGcaGCGGUuUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 21424 0.66 0.502213
Target:  5'- -aGCGCCGGCCGacgaacgggcggugUCGUUcgAGGCgUGGUg -3'
miRNA:   3'- caUGCGGCCGGC--------------AGCGG--UUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 35151 0.67 0.409753
Target:  5'- -cACGCCGuuGCCGUCGUac-ACCC-GCa -3'
miRNA:   3'- caUGCGGC--CGGCAGCGguuUGGGcCG- -5'
24815 5' -59.9 NC_005284.1 + 651 0.66 0.505224
Target:  5'- aGUugGCgGGCCa--GCCcGGCuaCCGGCu -3'
miRNA:   3'- -CAugCGgCCGGcagCGGuUUG--GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 32775 0.66 0.456147
Target:  5'- -cACGCCGGUCGcccuguuucUCGUUAcuucuguucgcAGCCCGGa -3'
miRNA:   3'- caUGCGGCCGGC---------AGCGGU-----------UUGGGCCg -5'
24815 5' -59.9 NC_005284.1 + 1016 0.67 0.437243
Target:  5'- -aGCaGCCGGCaucagcaaacCGUaucucaGCCAAaucgaaACCCGGCa -3'
miRNA:   3'- caUG-CGGCCG----------GCAg-----CGGUU------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 8299 0.66 0.462867
Target:  5'- -gGCGUCGGCCaUgcacgagcagcuaaCGCCAGcgucggacGCUCGGCg -3'
miRNA:   3'- caUGCGGCCGGcA--------------GCGGUU--------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 9228 0.66 0.465763
Target:  5'- aGUGCGCgGGCgaCG-CGCC--ACgCGGCg -3'
miRNA:   3'- -CAUGCGgCCG--GCaGCGGuuUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 46351 0.66 0.475482
Target:  5'- cGU-CGCgGGC--UCGCCGGACCaucuCGGCa -3'
miRNA:   3'- -CAuGCGgCCGgcAGCGGUUUGG----GCCG- -5'
24815 5' -59.9 NC_005284.1 + 44342 0.66 0.495217
Target:  5'- uUGCGCCGcCCGcgUCGCCAAAuUCCGa- -3'
miRNA:   3'- cAUGCGGCcGGC--AGCGGUUU-GGGCcg -5'
24815 5' -59.9 NC_005284.1 + 7980 0.69 0.303891
Target:  5'- -gGCGCaagaGGUCGagaaaucCGCCGccuGCCCGGCa -3'
miRNA:   3'- caUGCGg---CCGGCa------GCGGUu--UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 32217 0.69 0.317964
Target:  5'- uGUGCGCC-GCCGauagcucuucuUCGaugcgcagcagguUCAGGCCCGGCa -3'
miRNA:   3'- -CAUGCGGcCGGC-----------AGC-------------GGUUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 30068 0.68 0.366411
Target:  5'- -gACGCaCGGgCGUCGUUucGCCCuucGGCg -3'
miRNA:   3'- caUGCG-GCCgGCAGCGGuuUGGG---CCG- -5'
24815 5' -59.9 NC_005284.1 + 27243 0.68 0.392035
Target:  5'- -aGCGCacgCGGCCaauaGCCGAACCCcGCg -3'
miRNA:   3'- caUGCG---GCCGGcag-CGGUUUGGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.