miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 9228 0.66 0.465763
Target:  5'- aGUGCGCgGGCgaCG-CGCC--ACgCGGCg -3'
miRNA:   3'- -CAUGCGgCCG--GCaGCGGuuUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 45022 0.66 0.465763
Target:  5'- -gACGUgagcuUGcGCCGUCGCCucgaccGCCCGcGCu -3'
miRNA:   3'- caUGCG-----GC-CGGCAGCGGuu----UGGGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 38115 0.66 0.465763
Target:  5'- -gACGCCGGCCucaCGCUcgacggccggaAAACCCGa- -3'
miRNA:   3'- caUGCGGCCGGca-GCGG-----------UUUGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 16049 0.66 0.465763
Target:  5'- uUGCGCCGGUaauCGUCGgCAguaAGCgCGGg -3'
miRNA:   3'- cAUGCGGCCG---GCAGCgGU---UUGgGCCg -5'
24815 5' -59.9 NC_005284.1 + 16670 0.66 0.465763
Target:  5'- ----uCCGGCCGUCGagcgUGAGgCCGGCg -3'
miRNA:   3'- caugcGGCCGGCAGCg---GUUUgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 21808 0.66 0.465763
Target:  5'- -gGCaGCCGGUggCGaCGgCGuGCCCGGCg -3'
miRNA:   3'- caUG-CGGCCG--GCaGCgGUuUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 37381 0.66 0.465763
Target:  5'- -gACGCCgcGGUCGUCGCCGuAGCgUuGCa -3'
miRNA:   3'- caUGCGG--CCGGCAGCGGU-UUGgGcCG- -5'
24815 5' -59.9 NC_005284.1 + 12439 0.66 0.464796
Target:  5'- -cGCGCCaguuucgaucgagGGCgGaUCGUCGAACCCcGCg -3'
miRNA:   3'- caUGCGG-------------CCGgC-AGCGGUUUGGGcCG- -5'
24815 5' -59.9 NC_005284.1 + 47278 0.66 0.464796
Target:  5'- cGUGauCGaCGGCCGUCGCCGcgugaucAACgCGcGCg -3'
miRNA:   3'- -CAU--GCgGCCGGCAGCGGU-------UUGgGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 8299 0.66 0.462867
Target:  5'- -gGCGUCGGCCaUgcacgagcagcuaaCGCCAGcgucggacGCUCGGCg -3'
miRNA:   3'- caUGCGGCCGGcA--------------GCGGUU--------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 46884 0.66 0.456147
Target:  5'- uUGCGCCGGCga---UUGAACCCGGCu -3'
miRNA:   3'- cAUGCGGCCGgcagcGGUUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 32775 0.66 0.456147
Target:  5'- -cACGCCGGUCGcccuguuucUCGUUAcuucuguucgcAGCCCGGa -3'
miRNA:   3'- caUGCGGCCGGC---------AGCGGU-----------UUGGGCCg -5'
24815 5' -59.9 NC_005284.1 + 33115 0.66 0.456147
Target:  5'- -gACGgCGGCCacCGCCG-ACgCGGCg -3'
miRNA:   3'- caUGCgGCCGGcaGCGGUuUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 6948 0.66 0.456147
Target:  5'- uGUGCGCUuucCgCGUCGUCAAugCCGaGCa -3'
miRNA:   3'- -CAUGCGGcc-G-GCAGCGGUUugGGC-CG- -5'
24815 5' -59.9 NC_005284.1 + 20834 0.66 0.456147
Target:  5'- -aGCGCCGGCCGa---CGAGCgggCGGCg -3'
miRNA:   3'- caUGCGGCCGGCagcgGUUUGg--GCCG- -5'
24815 5' -59.9 NC_005284.1 + 4487 0.66 0.456147
Target:  5'- -cGCGgCGGCgGUagCGCCGAACUCGa- -3'
miRNA:   3'- caUGCgGCCGgCA--GCGGUUUGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 433 0.67 0.446639
Target:  5'- -gGCGCaauGCUGggGCUcGACCCGGCg -3'
miRNA:   3'- caUGCGgc-CGGCagCGGuUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 22116 0.67 0.446639
Target:  5'- gGUcCGCUGGCCccCGCCGAugCgGGa -3'
miRNA:   3'- -CAuGCGGCCGGcaGCGGUUugGgCCg -5'
24815 5' -59.9 NC_005284.1 + 2043 0.67 0.446639
Target:  5'- --cUGCCGGCUGcuuaGCCAca-CCGGCc -3'
miRNA:   3'- cauGCGGCCGGCag--CGGUuugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 16058 0.67 0.437243
Target:  5'- -cAUGCCGuCCGgCGCCAugcagcgcauuGAgCCGGCa -3'
miRNA:   3'- caUGCGGCcGGCaGCGGU-----------UUgGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.