miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 1016 0.67 0.437243
Target:  5'- -aGCaGCCGGCaucagcaaacCGUaucucaGCCAAaucgaaACCCGGCa -3'
miRNA:   3'- caUG-CGGCCG----------GCAg-----CGGUU------UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 16058 0.67 0.437243
Target:  5'- -cAUGCCGuCCGgCGCCAugcagcgcauuGAgCCGGCa -3'
miRNA:   3'- caUGCGGCcGGCaGCGGU-----------UUgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 30466 0.67 0.435377
Target:  5'- uGUGCuGCCGGCCGgcgugaccaucaCGuCCGAACU-GGCg -3'
miRNA:   3'- -CAUG-CGGCCGGCa-----------GC-GGUUUGGgCCG- -5'
24815 5' -59.9 NC_005284.1 + 28740 0.67 0.434446
Target:  5'- --uCGCgGGCUgaagucgauccgggGUCGCCGAcaucgagcCCCGGCa -3'
miRNA:   3'- cauGCGgCCGG--------------CAGCGGUUu-------GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 47723 0.67 0.427961
Target:  5'- cGUGCGCagaaGGCCGU-GCUcgGCgguaCGGCg -3'
miRNA:   3'- -CAUGCGg---CCGGCAgCGGuuUGg---GCCG- -5'
24815 5' -59.9 NC_005284.1 + 46711 0.67 0.427961
Target:  5'- --uCGUCGuccgagaauaGCCGcCGCCAAccAUCCGGCg -3'
miRNA:   3'- cauGCGGC----------CGGCaGCGGUU--UGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 39793 0.67 0.427961
Target:  5'- -gGCGUCGGUCGUauucgaGCUucAACCgGGCc -3'
miRNA:   3'- caUGCGGCCGGCAg-----CGGu-UUGGgCCG- -5'
24815 5' -59.9 NC_005284.1 + 21626 0.67 0.418797
Target:  5'- -cGCGCCGcGCuCGaCGCCGAGCagCGuGCg -3'
miRNA:   3'- caUGCGGC-CG-GCaGCGGUUUGg-GC-CG- -5'
24815 5' -59.9 NC_005284.1 + 27871 0.67 0.417887
Target:  5'- -aACGCCgagGGCgaucccaucaUGUCGCgcaugcaUAAGCCCGGCg -3'
miRNA:   3'- caUGCGG---CCG----------GCAGCG-------GUUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 35151 0.67 0.409753
Target:  5'- -cACGCCGuuGCCGUCGUac-ACCC-GCa -3'
miRNA:   3'- caUGCGGC--CGGCAGCGguuUGGGcCG- -5'
24815 5' -59.9 NC_005284.1 + 24737 0.67 0.409753
Target:  5'- cGUGCGUcuuCGGCC--CGCUAcacccGACCCGGUc -3'
miRNA:   3'- -CAUGCG---GCCGGcaGCGGU-----UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 53892 0.67 0.409753
Target:  5'- ---gGgCGGCCGUCGUCGcuuGCCUuGGCc -3'
miRNA:   3'- caugCgGCCGGCAGCGGUu--UGGG-CCG- -5'
24815 5' -59.9 NC_005284.1 + 7714 0.67 0.409753
Target:  5'- gGUGCGCCGaagcucguGCCGcCGCCGG---CGGCg -3'
miRNA:   3'- -CAUGCGGC--------CGGCaGCGGUUuggGCCG- -5'
24815 5' -59.9 NC_005284.1 + 33952 0.67 0.409753
Target:  5'- -aGCGCCGcCCGcUCGUCGG--CCGGCg -3'
miRNA:   3'- caUGCGGCcGGC-AGCGGUUugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 27688 0.67 0.409753
Target:  5'- -cGCGCgGGUCGcCGCUgccuGAuUCCGGCg -3'
miRNA:   3'- caUGCGgCCGGCaGCGG----UUuGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 54711 0.67 0.400832
Target:  5'- cGUGcCGUCGGCUuggGUuuucUGCCccGGCCCGGCa -3'
miRNA:   3'- -CAU-GCGGCCGG---CA----GCGGu-UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 12139 0.67 0.400832
Target:  5'- -cGCGCuCGGUgGUgCGgCAAGCgCGGCu -3'
miRNA:   3'- caUGCG-GCCGgCA-GCgGUUUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 33371 0.67 0.398179
Target:  5'- cGUuCGUCGGCCGgcgcugccgacggcUCGCCAucACCCGa- -3'
miRNA:   3'- -CAuGCGGCCGGC--------------AGCGGUu-UGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 37796 0.68 0.392035
Target:  5'- uUGCGuuGGCCacaaaucCGCCAcgcGCCCGGa -3'
miRNA:   3'- cAUGCggCCGGca-----GCGGUu--UGGGCCg -5'
24815 5' -59.9 NC_005284.1 + 18477 0.68 0.392035
Target:  5'- -cGCGCgGGUgCG-CGCCGAgaacgcGCUCGGCg -3'
miRNA:   3'- caUGCGgCCG-GCaGCGGUU------UGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.