miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 3' -57.6 NC_005284.1 + 47941 1.06 0.00091
Target:  5'- gAGCACACGAUCGAUCGCGCGCGCCAAc -3'
miRNA:   3'- -UCGUGUGCUAGCUAGCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 6849 0.79 0.087987
Target:  5'- cGCGCGCGAUCGAUCGUGUGCuCgGAg -3'
miRNA:   3'- uCGUGUGCUAGCUAGCGCGCGcGgUU- -5'
24816 3' -57.6 NC_005284.1 + 39332 0.76 0.126505
Target:  5'- cGCGCACGAUCGcguagcaGUCGUGCaCGCCAu -3'
miRNA:   3'- uCGUGUGCUAGC-------UAGCGCGcGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 17682 0.74 0.191095
Target:  5'- uGCGCGCGAUCG--UGCGCGaCGCCc- -3'
miRNA:   3'- uCGUGUGCUAGCuaGCGCGC-GCGGuu -5'
24816 3' -57.6 NC_005284.1 + 43368 0.73 0.206973
Target:  5'- cGGUuuuCGCGAUCGA-CGCaGCGCGUCAAg -3'
miRNA:   3'- -UCGu--GUGCUAGCUaGCG-CGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 7084 0.72 0.261546
Target:  5'- cGCACGCGAg----CGCGCGUGCCc- -3'
miRNA:   3'- uCGUGUGCUagcuaGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 9753 0.72 0.264225
Target:  5'- aAGCGCggGCGGUCGAggcgacggcgcaagcUCacgucgcaacgGCGCGCGCCAAc -3'
miRNA:   3'- -UCGUG--UGCUAGCU---------------AG-----------CGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 9585 0.71 0.275163
Target:  5'- aAGCGCAgGG-CGAUCGCGC-UGCCGc -3'
miRNA:   3'- -UCGUGUgCUaGCUAGCGCGcGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 47706 0.71 0.311672
Target:  5'- aAGgGCACGcgCGcUCGCGUGCGCa-- -3'
miRNA:   3'- -UCgUGUGCuaGCuAGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 19409 0.7 0.319402
Target:  5'- cGGUGCAgGcgUGAUCG-GCGCGCCGu -3'
miRNA:   3'- -UCGUGUgCuaGCUAGCgCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 46793 0.7 0.327274
Target:  5'- uGUGCGCG-UCGucacUCGCGCGCGCgAAc -3'
miRNA:   3'- uCGUGUGCuAGCu---AGCGCGCGCGgUU- -5'
24816 3' -57.6 NC_005284.1 + 43112 0.7 0.340984
Target:  5'- -uCACGCGAUUGAuggccugauucagcUCGCGCGCGUUg- -3'
miRNA:   3'- ucGUGUGCUAGCU--------------AGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 23162 0.7 0.343447
Target:  5'- gGGCAC-CGAUCG-UCGCGgCGCGUUc- -3'
miRNA:   3'- -UCGUGuGCUAGCuAGCGC-GCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 8713 0.7 0.351746
Target:  5'- uGCGCGCGcUCGA-CGCGgCGCGCa-- -3'
miRNA:   3'- uCGUGUGCuAGCUaGCGC-GCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 6360 0.69 0.360187
Target:  5'- uGCACGCGG-CGAUUG-GCGCGUCu- -3'
miRNA:   3'- uCGUGUGCUaGCUAGCgCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 51729 0.69 0.360187
Target:  5'- aAGCGCguguACGGaaaGAUCGCgGCGCGCCu- -3'
miRNA:   3'- -UCGUG----UGCUag-CUAGCG-CGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 19115 0.69 0.368768
Target:  5'- cGC-CGCGGUgcagaaggagaCGAUUGCGCGUGUCGAa -3'
miRNA:   3'- uCGuGUGCUA-----------GCUAGCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 15452 0.69 0.377488
Target:  5'- cGUGCACGAcugcuacgCGAUCGUGCGCgacugguaucucGCCGAg -3'
miRNA:   3'- uCGUGUGCUa-------GCUAGCGCGCG------------CGGUU- -5'
24816 3' -57.6 NC_005284.1 + 3122 0.69 0.39534
Target:  5'- cGCGaaaGCuGAUCG-UCGCGCGCGCg-- -3'
miRNA:   3'- uCGUg--UG-CUAGCuAGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 29917 0.69 0.39534
Target:  5'- gAGCACuACGAgugcUCGA-CGUGCGUGCUg- -3'
miRNA:   3'- -UCGUG-UGCU----AGCUaGCGCGCGCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.