miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 3' -57.6 NC_005284.1 + 320 0.68 0.452032
Target:  5'- cGCGCAUGA-CGAUUGC-CGCGCa-- -3'
miRNA:   3'- uCGUGUGCUaGCUAGCGcGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 3122 0.69 0.39534
Target:  5'- cGCGaaaGCuGAUCG-UCGCGCGCGCg-- -3'
miRNA:   3'- uCGUg--UG-CUAGCuAGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 5997 0.66 0.55526
Target:  5'- gGGCAgCuCGAUUGAUCGCaGUuCGCCAu -3'
miRNA:   3'- -UCGU-GuGCUAGCUAGCG-CGcGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 6360 0.69 0.360187
Target:  5'- uGCACGCGG-CGAUUG-GCGCGUCu- -3'
miRNA:   3'- uCGUGUGCUaGCUAGCgCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 6622 0.67 0.492194
Target:  5'- gGGCGuCACu-UCGccaGCGCGCGCCGGa -3'
miRNA:   3'- -UCGU-GUGcuAGCuagCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 6849 0.79 0.087987
Target:  5'- cGCGCGCGAUCGAUCGUGUGCuCgGAg -3'
miRNA:   3'- uCGUGUGCUAGCUAGCGCGCGcGgUU- -5'
24816 3' -57.6 NC_005284.1 + 7084 0.72 0.261546
Target:  5'- cGCACGCGAg----CGCGCGUGCCc- -3'
miRNA:   3'- uCGUGUGCUagcuaGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 7480 0.67 0.471897
Target:  5'- cAGUugACGGUUcaGcUCGCGCGCGUUGAu -3'
miRNA:   3'- -UCGugUGCUAG--CuAGCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 8713 0.7 0.351746
Target:  5'- uGCGCGCGcUCGA-CGCGgCGCGCa-- -3'
miRNA:   3'- uCGUGUGCuAGCUaGCGC-GCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 9585 0.71 0.275163
Target:  5'- aAGCGCAgGG-CGAUCGCGC-UGCCGc -3'
miRNA:   3'- -UCGUGUgCUaGCUAGCGCGcGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 9667 0.67 0.492194
Target:  5'- gGGCAUGCGAgCGAU-GCGCGaaaGCCu- -3'
miRNA:   3'- -UCGUGUGCUaGCUAgCGCGCg--CGGuu -5'
24816 3' -57.6 NC_005284.1 + 9753 0.72 0.264225
Target:  5'- aAGCGCggGCGGUCGAggcgacggcgcaagcUCacgucgcaacgGCGCGCGCCAAc -3'
miRNA:   3'- -UCGUG--UGCUAGCU---------------AG-----------CGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 10391 0.67 0.523363
Target:  5'- uGCGCACGAagcaagaggCG-UCGCGgGCgGCCGAu -3'
miRNA:   3'- uCGUGUGCUa--------GCuAGCGCgCG-CGGUU- -5'
24816 3' -57.6 NC_005284.1 + 11226 0.67 0.509758
Target:  5'- cGCACccugACGggCGAaacccguccggaccUUGCGCGCGCUAu -3'
miRNA:   3'- uCGUG----UGCuaGCU--------------AGCGCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 11405 0.67 0.523363
Target:  5'- cAGCGCGgGAcUUGA-CGCGCuGCGUCGAu -3'
miRNA:   3'- -UCGUGUgCU-AGCUaGCGCG-CGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 12414 0.67 0.511841
Target:  5'- cGCGCAaCGGcgggaucUCGGUCa-GCGCGCCAGu -3'
miRNA:   3'- uCGUGU-GCU-------AGCUAGcgCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 13187 0.66 0.566024
Target:  5'- cGCACuCGGcgCGGccUCGCGCGCGUa-- -3'
miRNA:   3'- uCGUGuGCUa-GCU--AGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 14616 0.66 0.57684
Target:  5'- cGGCGC-CGAaCGcUCGCGCGCuaccucgacGCCGu -3'
miRNA:   3'- -UCGUGuGCUaGCuAGCGCGCG---------CGGUu -5'
24816 3' -57.6 NC_005284.1 + 15452 0.69 0.377488
Target:  5'- cGUGCACGAcugcuacgCGAUCGUGCGCgacugguaucucGCCGAg -3'
miRNA:   3'- uCGUGUGCUa-------GCUAGCGCGCG------------CGGUU- -5'
24816 3' -57.6 NC_005284.1 + 15837 0.68 0.461908
Target:  5'- cGCGCACGAaggUCGAcgaaGUGCuCGCCGAa -3'
miRNA:   3'- uCGUGUGCU---AGCUag--CGCGcGCGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.