miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 3' -57.6 NC_005284.1 + 16018 0.68 0.441303
Target:  5'- gAGCAUcCGGUCGggCGCGacgagauccgcauUGCGCCGGu -3'
miRNA:   3'- -UCGUGuGCUAGCuaGCGC-------------GCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 16948 0.68 0.461908
Target:  5'- cGCGCGCaaaaaaugguuGUUGAUcCGCGUGCGCCGc -3'
miRNA:   3'- uCGUGUGc----------UAGCUA-GCGCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 16998 0.67 0.523363
Target:  5'- cGCACACGGcgaCGAUCGCcGaCGCGaUCAAc -3'
miRNA:   3'- uCGUGUGCUa--GCUAGCG-C-GCGC-GGUU- -5'
24816 3' -57.6 NC_005284.1 + 17682 0.74 0.191095
Target:  5'- uGCGCGCGAUCG--UGCGCGaCGCCc- -3'
miRNA:   3'- uCGUGUGCUAGCuaGCGCGC-GCGGuu -5'
24816 3' -57.6 NC_005284.1 + 18199 0.66 0.55526
Target:  5'- aAGUACGCGG-CGAUCGaCGacgGCGCaCAGa -3'
miRNA:   3'- -UCGUGUGCUaGCUAGC-GCg--CGCG-GUU- -5'
24816 3' -57.6 NC_005284.1 + 18754 0.66 0.552043
Target:  5'- gGGCuCGCGGUCGGgcagguguuuuauuUCuGgGCGCGCCu- -3'
miRNA:   3'- -UCGuGUGCUAGCU--------------AG-CgCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 18914 0.66 0.566024
Target:  5'- cGGCGCuuGGcaCGGagcUGCGCGCGCCGAu -3'
miRNA:   3'- -UCGUGugCUa-GCUa--GCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 19115 0.69 0.368768
Target:  5'- cGC-CGCGGUgcagaaggagaCGAUUGCGCGUGUCGAa -3'
miRNA:   3'- uCGuGUGCUA-----------GCUAGCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 19409 0.7 0.319402
Target:  5'- cGGUGCAgGcgUGAUCG-GCGCGCCGu -3'
miRNA:   3'- -UCGUGUgCuaGCUAGCgCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 22751 0.66 0.533923
Target:  5'- gAGCGgcUGCGGUCGAUCaagggGCGCGCGaUCGu -3'
miRNA:   3'- -UCGU--GUGCUAGCUAG-----CGCGCGC-GGUu -5'
24816 3' -57.6 NC_005284.1 + 22920 0.66 0.559559
Target:  5'- cGGCGCAgccagucgggcuguuCuGAUCGAUUgGCGCGCGCg-- -3'
miRNA:   3'- -UCGUGU---------------G-CUAGCUAG-CGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 23162 0.7 0.343447
Target:  5'- gGGCAC-CGAUCG-UCGCGgCGCGUUc- -3'
miRNA:   3'- -UCGUGuGCUAGCuAGCGC-GCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 23900 0.67 0.471897
Target:  5'- --gACugGGcUCGGUCGCuGCGCGaCCAGu -3'
miRNA:   3'- ucgUGugCU-AGCUAGCG-CGCGC-GGUU- -5'
24816 3' -57.6 NC_005284.1 + 26344 0.67 0.502492
Target:  5'- cAGCgcgGCACGGUCaa-CGCcgGCGCGCCGGu -3'
miRNA:   3'- -UCG---UGUGCUAGcuaGCG--CGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 27506 0.67 0.502492
Target:  5'- uGGCG-AUGAUCGAUgG-GCGCGUCGAg -3'
miRNA:   3'- -UCGUgUGCUAGCUAgCgCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 29917 0.69 0.39534
Target:  5'- gAGCACuACGAgugcUCGA-CGUGCGUGCUg- -3'
miRNA:   3'- -UCGUG-UGCU----AGCUaGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 30406 0.68 0.442272
Target:  5'- cGGCAUGuCGAUCGucCGCGUGCGCg-- -3'
miRNA:   3'- -UCGUGU-GCUAGCuaGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 30880 0.69 0.39534
Target:  5'- cAGCGCAC---UGGUCGCGCaGCGaCCGAg -3'
miRNA:   3'- -UCGUGUGcuaGCUAGCGCG-CGC-GGUU- -5'
24816 3' -57.6 NC_005284.1 + 31154 0.66 0.533923
Target:  5'- uGGUugACGAUCG-UCGCGC-CGauCCAGa -3'
miRNA:   3'- -UCGugUGCUAGCuAGCGCGcGC--GGUU- -5'
24816 3' -57.6 NC_005284.1 + 32875 0.67 0.523363
Target:  5'- cGCGC-UGAUCG-UCGCcgGCGaCGCCGAa -3'
miRNA:   3'- uCGUGuGCUAGCuAGCG--CGC-GCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.