miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 3' -57.6 NC_005284.1 + 9753 0.72 0.264225
Target:  5'- aAGCGCggGCGGUCGAggcgacggcgcaagcUCacgucgcaacgGCGCGCGCCAAc -3'
miRNA:   3'- -UCGUG--UGCUAGCU---------------AG-----------CGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 9585 0.71 0.275163
Target:  5'- aAGCGCAgGG-CGAUCGCGC-UGCCGc -3'
miRNA:   3'- -UCGUGUgCUaGCUAGCGCGcGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 47706 0.71 0.311672
Target:  5'- aAGgGCACGcgCGcUCGCGUGCGCa-- -3'
miRNA:   3'- -UCgUGUGCuaGCuAGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 19409 0.7 0.319402
Target:  5'- cGGUGCAgGcgUGAUCG-GCGCGCCGu -3'
miRNA:   3'- -UCGUGUgCuaGCUAGCgCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 23162 0.7 0.343447
Target:  5'- gGGCAC-CGAUCG-UCGCGgCGCGUUc- -3'
miRNA:   3'- -UCGUGuGCUAGCuAGCGC-GCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 8713 0.7 0.351746
Target:  5'- uGCGCGCGcUCGA-CGCGgCGCGCa-- -3'
miRNA:   3'- uCGUGUGCuAGCUaGCGC-GCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 51729 0.69 0.360187
Target:  5'- aAGCGCguguACGGaaaGAUCGCgGCGCGCCu- -3'
miRNA:   3'- -UCGUG----UGCUag-CUAGCG-CGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 30406 0.68 0.442272
Target:  5'- cGGCAUGuCGAUCGucCGCGUGCGCg-- -3'
miRNA:   3'- -UCGUGU-GCUAGCuaGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 16018 0.68 0.441303
Target:  5'- gAGCAUcCGGUCGggCGCGacgagauccgcauUGCGCCGGu -3'
miRNA:   3'- -UCGUGuGCUAGCuaGCGC-------------GCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 41597 0.68 0.423117
Target:  5'- cGUACGCGcgCGAg-GC-CGCGCCGAg -3'
miRNA:   3'- uCGUGUGCuaGCUagCGcGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 29917 0.69 0.39534
Target:  5'- gAGCACuACGAgugcUCGA-CGUGCGUGCUg- -3'
miRNA:   3'- -UCGUG-UGCU----AGCUaGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 30880 0.69 0.39534
Target:  5'- cAGCGCAC---UGGUCGCGCaGCGaCCGAg -3'
miRNA:   3'- -UCGUGUGcuaGCUAGCGCG-CGC-GGUU- -5'
24816 3' -57.6 NC_005284.1 + 15452 0.69 0.377488
Target:  5'- cGUGCACGAcugcuacgCGAUCGUGCGCgacugguaucucGCCGAg -3'
miRNA:   3'- uCGUGUGCUa-------GCUAGCGCGCG------------CGGUU- -5'
24816 3' -57.6 NC_005284.1 + 19115 0.69 0.368768
Target:  5'- cGC-CGCGGUgcagaaggagaCGAUUGCGCGUGUCGAa -3'
miRNA:   3'- uCGuGUGCUA-----------GCUAGCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 44975 0.66 0.54136
Target:  5'- cGCGCGcCGAUuuccugacugccggCGAcguUgGCGCGCGCCGu -3'
miRNA:   3'- uCGUGU-GCUA--------------GCU---AgCGCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 42150 0.66 0.544558
Target:  5'- cGCACACGcagcGUCGuAUCGCcGCcGUGCCc- -3'
miRNA:   3'- uCGUGUGC----UAGC-UAGCG-CG-CGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 5997 0.66 0.55526
Target:  5'- gGGCAgCuCGAUUGAUCGCaGUuCGCCAu -3'
miRNA:   3'- -UCGU-GuGCUAGCUAGCG-CGcGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 42367 0.66 0.55526
Target:  5'- uGGCGCGCuGAcCGAgauccCGCcguuGCGCGCCGg -3'
miRNA:   3'- -UCGUGUG-CUaGCUa----GCG----CGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 39691 0.66 0.55526
Target:  5'- cAGCACucgcGCGGauacucugCGAgCGCGUGCGCCu- -3'
miRNA:   3'- -UCGUG----UGCUa-------GCUaGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 47941 1.06 0.00091
Target:  5'- gAGCACACGAUCGAUCGCGCGCGCCAAc -3'
miRNA:   3'- -UCGUGUGCUAGCUAGCGCGCGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.