miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 3' -57.6 NC_005284.1 + 26344 0.67 0.502492
Target:  5'- cAGCgcgGCACGGUCaa-CGCcgGCGCGCCGGu -3'
miRNA:   3'- -UCG---UGUGCUAGcuaGCG--CGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 29917 0.69 0.39534
Target:  5'- gAGCACuACGAgugcUCGA-CGUGCGUGCUg- -3'
miRNA:   3'- -UCGUG-UGCU----AGCUaGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 41597 0.68 0.423117
Target:  5'- cGUACGCGcgCGAg-GC-CGCGCCGAg -3'
miRNA:   3'- uCGUGUGCuaGCUagCGcGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 16018 0.68 0.441303
Target:  5'- gAGCAUcCGGUCGggCGCGacgagauccgcauUGCGCCGGu -3'
miRNA:   3'- -UCGUGuGCUAGCuaGCGC-------------GCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 30406 0.68 0.442272
Target:  5'- cGGCAUGuCGAUCGucCGCGUGCGCg-- -3'
miRNA:   3'- -UCGUGU-GCUAGCuaGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 16948 0.68 0.461908
Target:  5'- cGCGCGCaaaaaaugguuGUUGAUcCGCGUGCGCCGc -3'
miRNA:   3'- uCGUGUGc----------UAGCUA-GCGCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 37113 0.67 0.475923
Target:  5'- cGCGCACGAUCGcgCGCagguagacgcccGUgaucucaucgacuccGCGCCGAu -3'
miRNA:   3'- uCGUGUGCUAGCuaGCG------------CG---------------CGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 9667 0.67 0.492194
Target:  5'- gGGCAUGCGAgCGAU-GCGCGaaaGCCu- -3'
miRNA:   3'- -UCGUGUGCUaGCUAgCGCGCg--CGGuu -5'
24816 3' -57.6 NC_005284.1 + 27506 0.67 0.502492
Target:  5'- uGGCG-AUGAUCGAUgG-GCGCGUCGAg -3'
miRNA:   3'- -UCGUgUGCUAGCUAgCgCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 30880 0.69 0.39534
Target:  5'- cAGCGCAC---UGGUCGCGCaGCGaCCGAg -3'
miRNA:   3'- -UCGUGUGcuaGCUAGCGCG-CGC-GGUU- -5'
24816 3' -57.6 NC_005284.1 + 15452 0.69 0.377488
Target:  5'- cGUGCACGAcugcuacgCGAUCGUGCGCgacugguaucucGCCGAg -3'
miRNA:   3'- uCGUGUGCUa-------GCUAGCGCGCG------------CGGUU- -5'
24816 3' -57.6 NC_005284.1 + 19115 0.69 0.368768
Target:  5'- cGC-CGCGGUgcagaaggagaCGAUUGCGCGUGUCGAa -3'
miRNA:   3'- uCGuGUGCUA-----------GCUAGCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 43368 0.73 0.206973
Target:  5'- cGGUuuuCGCGAUCGA-CGCaGCGCGUCAAg -3'
miRNA:   3'- -UCGu--GUGCUAGCUaGCG-CGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 9753 0.72 0.264225
Target:  5'- aAGCGCggGCGGUCGAggcgacggcgcaagcUCacgucgcaacgGCGCGCGCCAAc -3'
miRNA:   3'- -UCGUG--UGCUAGCU---------------AG-----------CGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 9585 0.71 0.275163
Target:  5'- aAGCGCAgGG-CGAUCGCGC-UGCCGc -3'
miRNA:   3'- -UCGUGUgCUaGCUAGCGCGcGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 47706 0.71 0.311672
Target:  5'- aAGgGCACGcgCGcUCGCGUGCGCa-- -3'
miRNA:   3'- -UCgUGUGCuaGCuAGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 19409 0.7 0.319402
Target:  5'- cGGUGCAgGcgUGAUCG-GCGCGCCGu -3'
miRNA:   3'- -UCGUGUgCuaGCUAGCgCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 23162 0.7 0.343447
Target:  5'- gGGCAC-CGAUCG-UCGCGgCGCGUUc- -3'
miRNA:   3'- -UCGUGuGCUAGCuAGCGC-GCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 8713 0.7 0.351746
Target:  5'- uGCGCGCGcUCGA-CGCGgCGCGCa-- -3'
miRNA:   3'- uCGUGUGCuAGCUaGCGC-GCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 51729 0.69 0.360187
Target:  5'- aAGCGCguguACGGaaaGAUCGCgGCGCGCCu- -3'
miRNA:   3'- -UCGUG----UGCUag-CUAGCG-CGCGCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.