miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 3' -57.6 NC_005284.1 + 13187 0.66 0.566024
Target:  5'- cGCACuCGGcgCGGccUCGCGCGCGUa-- -3'
miRNA:   3'- uCGUGuGCUa-GCU--AGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 46076 0.68 0.442272
Target:  5'- uGCGCGCcgcGUCGAgCGCGCGCaCCGu -3'
miRNA:   3'- uCGUGUGc--UAGCUaGCGCGCGcGGUu -5'
24816 3' -57.6 NC_005284.1 + 6360 0.69 0.360187
Target:  5'- uGCACGCGG-CGAUUG-GCGCGUCu- -3'
miRNA:   3'- uCGUGUGCUaGCUAGCgCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 47941 1.06 0.00091
Target:  5'- gAGCACACGAUCGAUCGCGCGCGCCAAc -3'
miRNA:   3'- -UCGUGUGCUAGCUAGCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 42150 0.66 0.544558
Target:  5'- cGCACACGcagcGUCGuAUCGCcGCcGUGCCc- -3'
miRNA:   3'- uCGUGUGC----UAGC-UAGCG-CG-CGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 44975 0.66 0.54136
Target:  5'- cGCGCGcCGAUuuccugacugccggCGAcguUgGCGCGCGCCGu -3'
miRNA:   3'- uCGUGU-GCUA--------------GCU---AgCGCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 35850 0.67 0.523363
Target:  5'- cGGCGgGgugauuaGGUCGAUCgGCGCGCGCa-- -3'
miRNA:   3'- -UCGUgUg------CUAGCUAG-CGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 11405 0.67 0.523363
Target:  5'- cAGCGCGgGAcUUGA-CGCGCuGCGUCGAu -3'
miRNA:   3'- -UCGUGUgCU-AGCUaGCGCG-CGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 6622 0.67 0.492194
Target:  5'- gGGCGuCACu-UCGccaGCGCGCGCCGGa -3'
miRNA:   3'- -UCGU-GUGcuAGCuagCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 320 0.68 0.452032
Target:  5'- cGCGCAUGA-CGAUUGC-CGCGCa-- -3'
miRNA:   3'- uCGUGUGCUaGCUAGCGcGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 23900 0.67 0.471897
Target:  5'- --gACugGGcUCGGUCGCuGCGCGaCCAGu -3'
miRNA:   3'- ucgUGugCU-AGCUAGCG-CGCGC-GGUU- -5'
24816 3' -57.6 NC_005284.1 + 11226 0.67 0.509758
Target:  5'- cGCACccugACGggCGAaacccguccggaccUUGCGCGCGCUAu -3'
miRNA:   3'- uCGUG----UGCuaGCU--------------AGCGCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 39691 0.66 0.55526
Target:  5'- cAGCACucgcGCGGauacucugCGAgCGCGUGCGCCu- -3'
miRNA:   3'- -UCGUG----UGCUa-------GCUaGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 15837 0.68 0.461908
Target:  5'- cGCGCACGAaggUCGAcgaaGUGCuCGCCGAa -3'
miRNA:   3'- uCGUGUGCU---AGCUag--CGCGcGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 42367 0.66 0.55526
Target:  5'- uGGCGCGCuGAcCGAgauccCGCcguuGCGCGCCGg -3'
miRNA:   3'- -UCGUGUG-CUaGCUa----GCG----CGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 44708 0.67 0.512884
Target:  5'- cGC-CGCGGUCGcgGUCGcCGCGCGUUc- -3'
miRNA:   3'- uCGuGUGCUAGC--UAGC-GCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 40174 0.68 0.452032
Target:  5'- uAGCGCGCGAgCGuUCgGCGCcggaacacuuucGCGCCGAc -3'
miRNA:   3'- -UCGUGUGCUaGCuAG-CGCG------------CGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 3122 0.69 0.39534
Target:  5'- cGCGaaaGCuGAUCG-UCGCGCGCGCg-- -3'
miRNA:   3'- uCGUg--UG-CUAGCuAGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 5997 0.66 0.55526
Target:  5'- gGGCAgCuCGAUUGAUCGCaGUuCGCCAu -3'
miRNA:   3'- -UCGU-GuGCUAGCUAGCG-CGcGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 32875 0.67 0.523363
Target:  5'- cGCGC-UGAUCG-UCGCcgGCGaCGCCGAa -3'
miRNA:   3'- uCGUGuGCUAGCuAGCG--CGC-GCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.