miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 3' -57.6 NC_005284.1 + 51729 0.69 0.360187
Target:  5'- aAGCGCguguACGGaaaGAUCGCgGCGCGCCu- -3'
miRNA:   3'- -UCGUG----UGCUag-CUAGCG-CGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 49344 0.66 0.566024
Target:  5'- cGUGCGCGAcgaccgaacuaUCGGUCGCaGCuuCGCCGAg -3'
miRNA:   3'- uCGUGUGCU-----------AGCUAGCG-CGc-GCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 47941 1.06 0.00091
Target:  5'- gAGCACACGAUCGAUCGCGCGCGCCAAc -3'
miRNA:   3'- -UCGUGUGCUAGCUAGCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 47706 0.71 0.311672
Target:  5'- aAGgGCACGcgCGcUCGCGUGCGCa-- -3'
miRNA:   3'- -UCgUGUGCuaGCuAGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 46793 0.7 0.327274
Target:  5'- uGUGCGCG-UCGucacUCGCGCGCGCgAAc -3'
miRNA:   3'- uCGUGUGCuAGCu---AGCGCGCGCGgUU- -5'
24816 3' -57.6 NC_005284.1 + 46076 0.68 0.442272
Target:  5'- uGCGCGCcgcGUCGAgCGCGCGCaCCGu -3'
miRNA:   3'- uCGUGUGc--UAGCUaGCGCGCGcGGUu -5'
24816 3' -57.6 NC_005284.1 + 44975 0.66 0.54136
Target:  5'- cGCGCGcCGAUuuccugacugccggCGAcguUgGCGCGCGCCGu -3'
miRNA:   3'- uCGUGU-GCUA--------------GCU---AgCGCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 44708 0.67 0.512884
Target:  5'- cGC-CGCGGUCGcgGUCGcCGCGCGUUc- -3'
miRNA:   3'- uCGuGUGCUAGC--UAGC-GCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 43835 0.67 0.520211
Target:  5'- uGCGC-CGAUCGAagcuuguccauuugUUGaGCGCGCCGu -3'
miRNA:   3'- uCGUGuGCUAGCU--------------AGCgCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 43368 0.73 0.206973
Target:  5'- cGGUuuuCGCGAUCGA-CGCaGCGCGUCAAg -3'
miRNA:   3'- -UCGu--GUGCUAGCUaGCG-CGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 43112 0.7 0.340984
Target:  5'- -uCACGCGAUUGAuggccugauucagcUCGCGCGCGUUg- -3'
miRNA:   3'- ucGUGUGCUAGCU--------------AGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 42367 0.66 0.55526
Target:  5'- uGGCGCGCuGAcCGAgauccCGCcguuGCGCGCCGg -3'
miRNA:   3'- -UCGUGUG-CUaGCUa----GCG----CGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 42150 0.66 0.544558
Target:  5'- cGCACACGcagcGUCGuAUCGCcGCcGUGCCc- -3'
miRNA:   3'- uCGUGUGC----UAGC-UAGCG-CG-CGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 41597 0.68 0.423117
Target:  5'- cGUACGCGcgCGAg-GC-CGCGCCGAg -3'
miRNA:   3'- uCGUGUGCuaGCUagCGcGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 40174 0.68 0.452032
Target:  5'- uAGCGCGCGAgCGuUCgGCGCcggaacacuuucGCGCCGAc -3'
miRNA:   3'- -UCGUGUGCUaGCuAG-CGCG------------CGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 39691 0.66 0.55526
Target:  5'- cAGCACucgcGCGGauacucugCGAgCGCGUGCGCCu- -3'
miRNA:   3'- -UCGUG----UGCUa-------GCUaGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 39332 0.76 0.126505
Target:  5'- cGCGCACGAUCGcguagcaGUCGUGCaCGCCAu -3'
miRNA:   3'- uCGUGUGCUAGC-------UAGCGCGcGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 37113 0.67 0.475923
Target:  5'- cGCGCACGAUCGcgCGCagguagacgcccGUgaucucaucgacuccGCGCCGAu -3'
miRNA:   3'- uCGUGUGCUAGCuaGCG------------CG---------------CGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 35850 0.67 0.523363
Target:  5'- cGGCGgGgugauuaGGUCGAUCgGCGCGCGCa-- -3'
miRNA:   3'- -UCGUgUg------CUAGCUAG-CGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 35461 0.66 0.55526
Target:  5'- cGCGCugGAUC--UCGCGCgGUGCgAGc -3'
miRNA:   3'- uCGUGugCUAGcuAGCGCG-CGCGgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.