miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 3' -57.6 NC_005284.1 + 43835 0.67 0.520211
Target:  5'- uGCGC-CGAUCGAagcuuguccauuugUUGaGCGCGCCGu -3'
miRNA:   3'- uCGUGuGCUAGCU--------------AGCgCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 44708 0.67 0.512884
Target:  5'- cGC-CGCGGUCGcgGUCGcCGCGCGUUc- -3'
miRNA:   3'- uCGuGUGCUAGC--UAGC-GCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 12414 0.67 0.511841
Target:  5'- cGCGCAaCGGcgggaucUCGGUCa-GCGCGCCAGu -3'
miRNA:   3'- uCGUGU-GCU-------AGCUAGcgCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 11226 0.67 0.509758
Target:  5'- cGCACccugACGggCGAaacccguccggaccUUGCGCGCGCUAu -3'
miRNA:   3'- uCGUG----UGCuaGCU--------------AGCGCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 26344 0.67 0.502492
Target:  5'- cAGCgcgGCACGGUCaa-CGCcgGCGCGCCGGu -3'
miRNA:   3'- -UCG---UGUGCUAGcuaGCG--CGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 27506 0.67 0.502492
Target:  5'- uGGCG-AUGAUCGAUgG-GCGCGUCGAg -3'
miRNA:   3'- -UCGUgUGCUAGCUAgCgCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 6622 0.67 0.492194
Target:  5'- gGGCGuCACu-UCGccaGCGCGCGCCGGa -3'
miRNA:   3'- -UCGU-GUGcuAGCuagCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 9667 0.67 0.492194
Target:  5'- gGGCAUGCGAgCGAU-GCGCGaaaGCCu- -3'
miRNA:   3'- -UCGUGUGCUaGCUAgCGCGCg--CGGuu -5'
24816 3' -57.6 NC_005284.1 + 37113 0.67 0.475923
Target:  5'- cGCGCACGAUCGcgCGCagguagacgcccGUgaucucaucgacuccGCGCCGAu -3'
miRNA:   3'- uCGUGUGCUAGCuaGCG------------CG---------------CGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 23900 0.67 0.471897
Target:  5'- --gACugGGcUCGGUCGCuGCGCGaCCAGu -3'
miRNA:   3'- ucgUGugCU-AGCUAGCG-CGCGC-GGUU- -5'
24816 3' -57.6 NC_005284.1 + 7480 0.67 0.471897
Target:  5'- cAGUugACGGUUcaGcUCGCGCGCGUUGAu -3'
miRNA:   3'- -UCGugUGCUAG--CuAGCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 16948 0.68 0.461908
Target:  5'- cGCGCGCaaaaaaugguuGUUGAUcCGCGUGCGCCGc -3'
miRNA:   3'- uCGUGUGc----------UAGCUA-GCGCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 15837 0.68 0.461908
Target:  5'- cGCGCACGAaggUCGAcgaaGUGCuCGCCGAa -3'
miRNA:   3'- uCGUGUGCU---AGCUag--CGCGcGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 40174 0.68 0.452032
Target:  5'- uAGCGCGCGAgCGuUCgGCGCcggaacacuuucGCGCCGAc -3'
miRNA:   3'- -UCGUGUGCUaGCuAG-CGCG------------CGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 320 0.68 0.452032
Target:  5'- cGCGCAUGA-CGAUUGC-CGCGCa-- -3'
miRNA:   3'- uCGUGUGCUaGCUAGCGcGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 46076 0.68 0.442272
Target:  5'- uGCGCGCcgcGUCGAgCGCGCGCaCCGu -3'
miRNA:   3'- uCGUGUGc--UAGCUaGCGCGCGcGGUu -5'
24816 3' -57.6 NC_005284.1 + 30406 0.68 0.442272
Target:  5'- cGGCAUGuCGAUCGucCGCGUGCGCg-- -3'
miRNA:   3'- -UCGUGU-GCUAGCuaGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 16018 0.68 0.441303
Target:  5'- gAGCAUcCGGUCGggCGCGacgagauccgcauUGCGCCGGu -3'
miRNA:   3'- -UCGUGuGCUAGCuaGCGC-------------GCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 41597 0.68 0.423117
Target:  5'- cGUACGCGcgCGAg-GC-CGCGCCGAg -3'
miRNA:   3'- uCGUGUGCuaGCUagCGcGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 29917 0.69 0.39534
Target:  5'- gAGCACuACGAgugcUCGA-CGUGCGUGCUg- -3'
miRNA:   3'- -UCGUG-UGCU----AGCUaGCGCGCGCGGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.