miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 21720 0.65 0.773438
Target:  5'- aUCACGAaugcguguaCGAGA-ACGGCGauGGUGUg -3'
miRNA:   3'- cAGUGCU---------GCUUUaUGCCGCggCCGCG- -5'
24817 3' -55 NC_005284.1 + 22088 0.68 0.635265
Target:  5'- -gCGCGACGGAAaa--GCGCUuGGCGCu -3'
miRNA:   3'- caGUGCUGCUUUaugcCGCGG-CCGCG- -5'
24817 3' -55 NC_005284.1 + 32525 0.69 0.591575
Target:  5'- gGUCGC-AUGAAGUACaGCGCCGcccCGCc -3'
miRNA:   3'- -CAGUGcUGCUUUAUGcCGCGGCc--GCG- -5'
24817 3' -55 NC_005284.1 + 47826 1.11 0.000875
Target:  5'- cGUCACGACGAAAUACGGCGCCGGCGCc -3'
miRNA:   3'- -CAGUGCUGCUUUAUGCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 38690 0.66 0.763362
Target:  5'- --aACGGCaacGAGUGCGGCGCCGagaauCGUg -3'
miRNA:   3'- cagUGCUGc--UUUAUGCCGCGGCc----GCG- -5'
24817 3' -55 NC_005284.1 + 6337 0.66 0.757251
Target:  5'- aUC-CGGCGAAGcUgguacugcacugcacGCGGCGaUUGGCGCg -3'
miRNA:   3'- cAGuGCUGCUUU-A---------------UGCCGC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 17695 0.66 0.732379
Target:  5'- -gCGCGACGcccuGAAUcu--CGCCGGCGCg -3'
miRNA:   3'- caGUGCUGC----UUUAugccGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 44998 0.67 0.711209
Target:  5'- --gGCGACGuug-GCGcGCGCCGuuGCg -3'
miRNA:   3'- cagUGCUGCuuuaUGC-CGCGGCcgCG- -5'
24817 3' -55 NC_005284.1 + 46062 0.67 0.700503
Target:  5'- uUCGCGGauCGAAcUGCGcgccGCGUCGaGCGCg -3'
miRNA:   3'- cAGUGCU--GCUUuAUGC----CGCGGC-CGCG- -5'
24817 3' -55 NC_005284.1 + 17428 0.67 0.668035
Target:  5'- cGUCaACGuCGAAGUGaaGGgGCCcgGGCGCu -3'
miRNA:   3'- -CAG-UGCuGCUUUAUg-CCgCGG--CCGCG- -5'
24817 3' -55 NC_005284.1 + 45886 0.67 0.689731
Target:  5'- uGUCGCGuCGA---GCGGuUGCCGuggucGCGCg -3'
miRNA:   3'- -CAGUGCuGCUuuaUGCC-GCGGC-----CGCG- -5'
24817 3' -55 NC_005284.1 + 11980 0.67 0.710142
Target:  5'- cUCACGAUGGcc-GCuGCuaucacguagaauGCCGGCGCg -3'
miRNA:   3'- cAGUGCUGCUuuaUGcCG-------------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 47945 0.65 0.773438
Target:  5'- -aCACGAuCGAuc-GCGcGCGCCaacucGGUGCg -3'
miRNA:   3'- caGUGCU-GCUuuaUGC-CGCGG-----CCGCG- -5'
24817 3' -55 NC_005284.1 + 35846 0.67 0.689731
Target:  5'- -cCAuCGGCGggGUGauuaGGuCGaUCGGCGCg -3'
miRNA:   3'- caGU-GCUGCuuUAUg---CC-GC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 37815 0.65 0.773438
Target:  5'- cGUU-CGGCGuGAUGCGGCGCa--CGCg -3'
miRNA:   3'- -CAGuGCUGCuUUAUGCCGCGgccGCG- -5'
24817 3' -55 NC_005284.1 + 47061 0.67 0.711209
Target:  5'- aGUUACGcCGccg-GCGGCGgcacgagcuUCGGCGCa -3'
miRNA:   3'- -CAGUGCuGCuuuaUGCCGC---------GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 6693 0.67 0.689731
Target:  5'- aGUCAagcgauaGGCGcucGGAUGacCGG-GCCGGCGCg -3'
miRNA:   3'- -CAGUg------CUGC---UUUAU--GCCgCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 27850 0.68 0.602469
Target:  5'- aGUCGCcaGACGAc--GCGcCGcCCGGCGCa -3'
miRNA:   3'- -CAGUG--CUGCUuuaUGCcGC-GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 36854 0.65 0.773438
Target:  5'- --gGCGGCGAuuguCGGCGCCuugucgaGCGUg -3'
miRNA:   3'- cagUGCUGCUuuauGCCGCGGc------CGCG- -5'
24817 3' -55 NC_005284.1 + 21404 0.66 0.732379
Target:  5'- gGUgAUGGCGAGccgucgGCaGCGCCGGC-Cg -3'
miRNA:   3'- -CAgUGCUGCUUua----UGcCGCGGCCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.