miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24818 3' -54.9 NC_005284.1 + 47698 1.09 0.001011
Target:  5'- cGAUCGACUGCCAAGUCGGCAAGCCGAu -3'
miRNA:   3'- -CUAGCUGACGGUUCAGCCGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 50504 0.77 0.180827
Target:  5'- gGAUCGAUcagaaCCGGGUCGGCAcGCCGAa -3'
miRNA:   3'- -CUAGCUGac---GGUUCAGCCGUuCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 33233 0.76 0.207025
Target:  5'- cGcgCGGcCUGCUc-GUCGGCAAGCCGAu -3'
miRNA:   3'- -CuaGCU-GACGGuuCAGCCGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 11581 0.73 0.304935
Target:  5'- aGAUCGAC-GCgGAGcUCGGCGacuacgcGGCCGAg -3'
miRNA:   3'- -CUAGCUGaCGgUUC-AGCCGU-------UCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 21006 0.73 0.337467
Target:  5'- cGAUCGACUaCgAAGUCGGC--GCCGGc -3'
miRNA:   3'- -CUAGCUGAcGgUUCAGCCGuuCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 7085 0.72 0.362829
Target:  5'- cGAUCGGCuUGCCGAcUUGGC-AGUCGAu -3'
miRNA:   3'- -CUAGCUG-ACGGUUcAGCCGuUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 462 0.71 0.398649
Target:  5'- --cCGGCagcGCCuGGUCGGCGcaaAGCCGAa -3'
miRNA:   3'- cuaGCUGa--CGGuUCAGCCGU---UCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 30753 0.7 0.456423
Target:  5'- aGAUUGAUccagcgGCCGGGUaGGCGAGCCa- -3'
miRNA:   3'- -CUAGCUGa-----CGGUUCAgCCGUUCGGcu -5'
24818 3' -54.9 NC_005284.1 + 14383 0.7 0.497338
Target:  5'- aGGUCGACUGCaCGGaaaUCGGC--GCCGAc -3'
miRNA:   3'- -CUAGCUGACG-GUUc--AGCCGuuCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 47003 0.69 0.518406
Target:  5'- cGGUCGcaAUUGUCAcucuuGcUCGGCGAGCCGGg -3'
miRNA:   3'- -CUAGC--UGACGGUu----C-AGCCGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 47415 0.69 0.529072
Target:  5'- aGAUCGACgaacGCCAGaUCGGCcgcGUCGAg -3'
miRNA:   3'- -CUAGCUGa---CGGUUcAGCCGuu-CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 15340 0.69 0.529072
Target:  5'- uGAUCGugUcGCUcGG-CGuGCAGGCCGAu -3'
miRNA:   3'- -CUAGCugA-CGGuUCaGC-CGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 6810 0.69 0.539819
Target:  5'- cGAUCGGCgagGCCGAGggGGCGAuucgcaCCGAg -3'
miRNA:   3'- -CUAGCUGa--CGGUUCagCCGUUc-----GGCU- -5'
24818 3' -54.9 NC_005284.1 + 20680 0.69 0.556073
Target:  5'- cGAUCGGCgUGCaguuuuacgguGUCGGCAcggaaccgggggcGGCCGAg -3'
miRNA:   3'- -CUAGCUG-ACGguu--------CAGCCGU-------------UCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 24393 0.68 0.572466
Target:  5'- cGAUCGACaUGCCGAccagCacacGCGGGCCGAg -3'
miRNA:   3'- -CUAGCUG-ACGGUUca--Gc---CGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 31313 0.68 0.583458
Target:  5'- gGAUCGACaguguUGUCGAaaacGUCGGCGAGCg-- -3'
miRNA:   3'- -CUAGCUG-----ACGGUU----CAGCCGUUCGgcu -5'
24818 3' -54.9 NC_005284.1 + 48274 0.68 0.58456
Target:  5'- cGUCGACUGCgauuucgcaagcuuCucgaaauccgcacgcAGGUCGGCGAGcCCGAu -3'
miRNA:   3'- cUAGCUGACG--------------G---------------UUCAGCCGUUC-GGCU- -5'
24818 3' -54.9 NC_005284.1 + 47287 0.68 0.605558
Target:  5'- cGUCGACcgagaauucGCCcGGaUCgGGCAAGCCGAg -3'
miRNA:   3'- cUAGCUGa--------CGGuUC-AG-CCGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 39989 0.68 0.605558
Target:  5'- aGAUCGAaauaauCUGCCGuuUCGGCAGuuGCUGGc -3'
miRNA:   3'- -CUAGCU------GACGGUucAGCCGUU--CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 30394 0.68 0.616647
Target:  5'- --gCGugUGCU-GGUCGGCAuGUCGAu -3'
miRNA:   3'- cuaGCugACGGuUCAGCCGUuCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.