miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24818 3' -54.9 NC_005284.1 + 5452 0.66 0.71583
Target:  5'- --gUGACcggUGCauuAGUCGaGCAAGCCGGc -3'
miRNA:   3'- cuaGCUG---ACGgu-UCAGC-CGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 6859 0.67 0.649958
Target:  5'- cGAUCGugUGCUcgGAGggcggCGGUGAGCgUGAu -3'
miRNA:   3'- -CUAGCugACGG--UUCa----GCCGUUCG-GCU- -5'
24818 3' -54.9 NC_005284.1 + 26098 0.67 0.649958
Target:  5'- aAUUGGCUgacaGCCA--UCGGCAAGCCc- -3'
miRNA:   3'- cUAGCUGA----CGGUucAGCCGUUCGGcu -5'
24818 3' -54.9 NC_005284.1 + 21551 0.67 0.661043
Target:  5'- cAUCGGCuUGCCGA--CGaGCAGGCCGc -3'
miRNA:   3'- cUAGCUG-ACGGUUcaGC-CGUUCGGCu -5'
24818 3' -54.9 NC_005284.1 + 16676 0.67 0.672099
Target:  5'- cGUCGAgCgugagGCCGGcGUCGGCGuGCCGc -3'
miRNA:   3'- cUAGCU-Ga----CGGUU-CAGCCGUuCGGCu -5'
24818 3' -54.9 NC_005284.1 + 21666 0.67 0.672099
Target:  5'- --aCGAUgccGCCGcGUCGGCGguGGCCGc -3'
miRNA:   3'- cuaGCUGa--CGGUuCAGCCGU--UCGGCu -5'
24818 3' -54.9 NC_005284.1 + 19017 0.67 0.683118
Target:  5'- uGGUCG-CUG-CAGG-CGGCGAucGCCGAg -3'
miRNA:   3'- -CUAGCuGACgGUUCaGCCGUU--CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 8421 0.66 0.694087
Target:  5'- uGUCGGacaugaUGCCGAGauggucCGGCGAGCCc- -3'
miRNA:   3'- cUAGCUg-----ACGGUUCa-----GCCGUUCGGcu -5'
24818 3' -54.9 NC_005284.1 + 58 0.66 0.71583
Target:  5'- --gCGACagUGCCGGGcCGGggcagaaaaccCAAGCCGAc -3'
miRNA:   3'- cuaGCUG--ACGGUUCaGCC-----------GUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 17479 0.67 0.638857
Target:  5'- -uUCGuACUggggcGCCGGGUCGGUGgucgcgucGGCCGAu -3'
miRNA:   3'- cuAGC-UGA-----CGGUUCAGCCGU--------UCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 30394 0.68 0.616647
Target:  5'- --gCGugUGCU-GGUCGGCAuGUCGAu -3'
miRNA:   3'- cuaGCugACGGuUCAGCCGUuCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 31313 0.68 0.583458
Target:  5'- gGAUCGACaguguUGUCGAaaacGUCGGCGAGCg-- -3'
miRNA:   3'- -CUAGCUG-----ACGGUU----CAGCCGUUCGgcu -5'
24818 3' -54.9 NC_005284.1 + 11581 0.73 0.304935
Target:  5'- aGAUCGAC-GCgGAGcUCGGCGacuacgcGGCCGAg -3'
miRNA:   3'- -CUAGCUGaCGgUUC-AGCCGU-------UCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 7085 0.72 0.362829
Target:  5'- cGAUCGGCuUGCCGAcUUGGC-AGUCGAu -3'
miRNA:   3'- -CUAGCUG-ACGGUUcAGCCGuUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 462 0.71 0.398649
Target:  5'- --cCGGCagcGCCuGGUCGGCGcaaAGCCGAa -3'
miRNA:   3'- cuaGCUGa--CGGuUCAGCCGU---UCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 30753 0.7 0.456423
Target:  5'- aGAUUGAUccagcgGCCGGGUaGGCGAGCCa- -3'
miRNA:   3'- -CUAGCUGa-----CGGUUCAgCCGUUCGGcu -5'
24818 3' -54.9 NC_005284.1 + 14383 0.7 0.497338
Target:  5'- aGGUCGACUGCaCGGaaaUCGGC--GCCGAc -3'
miRNA:   3'- -CUAGCUGACG-GUUc--AGCCGuuCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 47003 0.69 0.518406
Target:  5'- cGGUCGcaAUUGUCAcucuuGcUCGGCGAGCCGGg -3'
miRNA:   3'- -CUAGC--UGACGGUu----C-AGCCGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 15340 0.69 0.529072
Target:  5'- uGAUCGugUcGCUcGG-CGuGCAGGCCGAu -3'
miRNA:   3'- -CUAGCugA-CGGuUCaGC-CGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 6810 0.69 0.539819
Target:  5'- cGAUCGGCgagGCCGAGggGGCGAuucgcaCCGAg -3'
miRNA:   3'- -CUAGCUGa--CGGUUCagCCGUUc-----GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.