miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24818 3' -54.9 NC_005284.1 + 54347 0.66 0.725511
Target:  5'- --cCGGCUcGCCGGGUCGagccccaGCAuugcGCCGAa -3'
miRNA:   3'- cuaGCUGA-CGGUUCAGC-------CGUu---CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 21006 0.73 0.337467
Target:  5'- cGAUCGACUaCgAAGUCGGC--GCCGGc -3'
miRNA:   3'- -CUAGCUGAcGgUUCAGCCGuuCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 24393 0.68 0.572466
Target:  5'- cGAUCGACaUGCCGAccagCacacGCGGGCCGAg -3'
miRNA:   3'- -CUAGCUG-ACGGUUca--Gc---CGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 48274 0.68 0.58456
Target:  5'- cGUCGACUGCgauuucgcaagcuuCucgaaauccgcacgcAGGUCGGCGAGcCCGAu -3'
miRNA:   3'- cUAGCUGACG--------------G---------------UUCAGCCGUUC-GGCU- -5'
24818 3' -54.9 NC_005284.1 + 47287 0.68 0.605558
Target:  5'- cGUCGACcgagaauucGCCcGGaUCgGGCAAGCCGAg -3'
miRNA:   3'- cUAGCUGa--------CGGuUC-AG-CCGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 19983 0.67 0.637747
Target:  5'- uGAUCGGCgaccgcGCCuaugacgAGGUCGGCGAagcuGCUGAu -3'
miRNA:   3'- -CUAGCUGa-----CGG-------UUCAGCCGUU----CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 47698 1.09 0.001011
Target:  5'- cGAUCGACUGCCAAGUCGGCAAGCCGAu -3'
miRNA:   3'- -CUAGCUGACGGUUCAGCCGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 47415 0.69 0.529072
Target:  5'- aGAUCGACgaacGCCAGaUCGGCcgcGUCGAg -3'
miRNA:   3'- -CUAGCUGa---CGGUUcAGCCGuu-CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 39989 0.68 0.605558
Target:  5'- aGAUCGAaauaauCUGCCGuuUCGGCAGuuGCUGGc -3'
miRNA:   3'- -CUAGCU------GACGGUucAGCCGUU--CGGCU- -5'
24818 3' -54.9 NC_005284.1 + 44271 0.67 0.683118
Target:  5'- cGAUCGagcGCUGCCugaUCGGCAu-CCGAg -3'
miRNA:   3'- -CUAGC---UGACGGuucAGCCGUucGGCU- -5'
24818 3' -54.9 NC_005284.1 + 30038 0.66 0.694087
Target:  5'- uAUCGACcggGUCGGGUguaGCGGGCCGAa -3'
miRNA:   3'- cUAGCUGa--CGGUUCAgc-CGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 45880 0.67 0.683118
Target:  5'- -cUCGGCUGUCGcGUCGaGCGguuGCCGu -3'
miRNA:   3'- cuAGCUGACGGUuCAGC-CGUu--CGGCu -5'
24818 3' -54.9 NC_005284.1 + 20680 0.69 0.556073
Target:  5'- cGAUCGGCgUGCaguuuuacgguGUCGGCAcggaaccgggggcGGCCGAg -3'
miRNA:   3'- -CUAGCUG-ACGguu--------CAGCCGU-------------UCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 33233 0.76 0.207025
Target:  5'- cGcgCGGcCUGCUc-GUCGGCAAGCCGAu -3'
miRNA:   3'- -CuaGCU-GACGGuuCAGCCGUUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 21551 0.67 0.661043
Target:  5'- cAUCGGCuUGCCGA--CGaGCAGGCCGc -3'
miRNA:   3'- cUAGCUG-ACGGUUcaGC-CGUUCGGCu -5'
24818 3' -54.9 NC_005284.1 + 26098 0.67 0.649958
Target:  5'- aAUUGGCUgacaGCCA--UCGGCAAGCCc- -3'
miRNA:   3'- cUAGCUGA----CGGUucAGCCGUUCGGcu -5'
24818 3' -54.9 NC_005284.1 + 6859 0.67 0.649958
Target:  5'- cGAUCGugUGCUcgGAGggcggCGGUGAGCgUGAu -3'
miRNA:   3'- -CUAGCugACGG--UUCa----GCCGUUCG-GCU- -5'
24818 3' -54.9 NC_005284.1 + 17479 0.67 0.638857
Target:  5'- -uUCGuACUggggcGCCGGGUCGGUGgucgcgucGGCCGAu -3'
miRNA:   3'- cuAGC-UGA-----CGGUUCAGCCGU--------UCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 7085 0.72 0.362829
Target:  5'- cGAUCGGCuUGCCGAcUUGGC-AGUCGAu -3'
miRNA:   3'- -CUAGCUG-ACGGUUcAGCCGuUCGGCU- -5'
24818 3' -54.9 NC_005284.1 + 47003 0.69 0.518406
Target:  5'- cGGUCGcaAUUGUCAcucuuGcUCGGCGAGCCGGg -3'
miRNA:   3'- -CUAGC--UGACGGUu----C-AGCCGUUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.