Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24818 | 3' | -54.9 | NC_005284.1 | + | 58 | 0.66 | 0.71583 |
Target: 5'- --gCGACagUGCCGGGcCGGggcagaaaaccCAAGCCGAc -3' miRNA: 3'- cuaGCUG--ACGGUUCaGCC-----------GUUCGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 462 | 0.71 | 0.398649 |
Target: 5'- --cCGGCagcGCCuGGUCGGCGcaaAGCCGAa -3' miRNA: 3'- cuaGCUGa--CGGuUCAGCCGU---UCGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 5452 | 0.66 | 0.71583 |
Target: 5'- --gUGACcggUGCauuAGUCGaGCAAGCCGGc -3' miRNA: 3'- cuaGCUG---ACGgu-UCAGC-CGUUCGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 6810 | 0.69 | 0.539819 |
Target: 5'- cGAUCGGCgagGCCGAGggGGCGAuucgcaCCGAg -3' miRNA: 3'- -CUAGCUGa--CGGUUCagCCGUUc-----GGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 6859 | 0.67 | 0.649958 |
Target: 5'- cGAUCGugUGCUcgGAGggcggCGGUGAGCgUGAu -3' miRNA: 3'- -CUAGCugACGG--UUCa----GCCGUUCG-GCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 7085 | 0.72 | 0.362829 |
Target: 5'- cGAUCGGCuUGCCGAcUUGGC-AGUCGAu -3' miRNA: 3'- -CUAGCUG-ACGGUUcAGCCGuUCGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 8421 | 0.66 | 0.694087 |
Target: 5'- uGUCGGacaugaUGCCGAGauggucCGGCGAGCCc- -3' miRNA: 3'- cUAGCUg-----ACGGUUCa-----GCCGUUCGGcu -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 11581 | 0.73 | 0.304935 |
Target: 5'- aGAUCGAC-GCgGAGcUCGGCGacuacgcGGCCGAg -3' miRNA: 3'- -CUAGCUGaCGgUUC-AGCCGU-------UCGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 14383 | 0.7 | 0.497338 |
Target: 5'- aGGUCGACUGCaCGGaaaUCGGC--GCCGAc -3' miRNA: 3'- -CUAGCUGACG-GUUc--AGCCGuuCGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 15340 | 0.69 | 0.529072 |
Target: 5'- uGAUCGugUcGCUcGG-CGuGCAGGCCGAu -3' miRNA: 3'- -CUAGCugA-CGGuUCaGC-CGUUCGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 15594 | 0.66 | 0.730856 |
Target: 5'- -cUCGACgucgGCCGcgacgugacguugcaGGUCGGCGAcgugcuGCUGAu -3' miRNA: 3'- cuAGCUGa---CGGU---------------UCAGCCGUU------CGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 16676 | 0.67 | 0.672099 |
Target: 5'- cGUCGAgCgugagGCCGGcGUCGGCGuGCCGc -3' miRNA: 3'- cUAGCU-Ga----CGGUU-CAGCCGUuCGGCu -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 16843 | 0.66 | 0.71583 |
Target: 5'- cGAUCGACuUGUC-GGUcgaCGGCGGGUCGu -3' miRNA: 3'- -CUAGCUG-ACGGuUCA---GCCGUUCGGCu -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 17479 | 0.67 | 0.638857 |
Target: 5'- -uUCGuACUggggcGCCGGGUCGGUGgucgcgucGGCCGAu -3' miRNA: 3'- cuAGC-UGA-----CGGUUCAGCCGU--------UCGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 19017 | 0.67 | 0.683118 |
Target: 5'- uGGUCG-CUG-CAGG-CGGCGAucGCCGAg -3' miRNA: 3'- -CUAGCuGACgGUUCaGCCGUU--CGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 19983 | 0.67 | 0.637747 |
Target: 5'- uGAUCGGCgaccgcGCCuaugacgAGGUCGGCGAagcuGCUGAu -3' miRNA: 3'- -CUAGCUGa-----CGG-------UUCAGCCGUU----CGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 20680 | 0.69 | 0.556073 |
Target: 5'- cGAUCGGCgUGCaguuuuacgguGUCGGCAcggaaccgggggcGGCCGAg -3' miRNA: 3'- -CUAGCUG-ACGguu--------CAGCCGU-------------UCGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 21006 | 0.73 | 0.337467 |
Target: 5'- cGAUCGACUaCgAAGUCGGC--GCCGGc -3' miRNA: 3'- -CUAGCUGAcGgUUCAGCCGuuCGGCU- -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 21551 | 0.67 | 0.661043 |
Target: 5'- cAUCGGCuUGCCGA--CGaGCAGGCCGc -3' miRNA: 3'- cUAGCUG-ACGGUUcaGC-CGUUCGGCu -5' |
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24818 | 3' | -54.9 | NC_005284.1 | + | 21666 | 0.67 | 0.672099 |
Target: 5'- --aCGAUgccGCCGcGUCGGCGguGGCCGc -3' miRNA: 3'- cuaGCUGa--CGGUuCAGCCGU--UCGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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