miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 5' -55 NC_005284.1 + 44714 0.69 0.558265
Target:  5'- gGUCGCggUCGC-CGCGCGuuccgCUCGCu -3'
miRNA:   3'- -CAGUG--AGCGcGCGCGCuugaaGAGCG- -5'
24819 5' -55 NC_005284.1 + 17333 0.71 0.464436
Target:  5'- aUC-CUCGCGC-CGaCGAugUUcCUCGCg -3'
miRNA:   3'- cAGuGAGCGCGcGC-GCUugAA-GAGCG- -5'
24819 5' -55 NC_005284.1 + 11389 0.68 0.611644
Target:  5'- aUUugUCGCGCcucgacaGCGCGgGACUUgaCGCg -3'
miRNA:   3'- cAGugAGCGCG-------CGCGC-UUGAAgaGCG- -5'
24819 5' -55 NC_005284.1 + 10372 0.66 0.707769
Target:  5'- aGUCGCcaacgaggcaguaaUCGCGCGuCGaCGAACUcaUCGUu -3'
miRNA:   3'- -CAGUG--------------AGCGCGC-GC-GCUUGAagAGCG- -5'
24819 5' -55 NC_005284.1 + 1293 0.7 0.515688
Target:  5'- --aGCccCGCGCG-GCGAaccggcgggGCUUCUCGCa -3'
miRNA:   3'- cagUGa-GCGCGCgCGCU---------UGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 40159 0.69 0.547514
Target:  5'- uUCACggcgUCGagguaGCGCGCGAGCgUUCggCGCc -3'
miRNA:   3'- cAGUG----AGCg----CGCGCGCUUG-AAGa-GCG- -5'
24819 5' -55 NC_005284.1 + 112 0.71 0.454503
Target:  5'- -cCGCUCGCGCGC-CGu-CUUCgcCGCg -3'
miRNA:   3'- caGUGAGCGCGCGcGCuuGAAGa-GCG- -5'
24819 5' -55 NC_005284.1 + 46802 1.13 0.000629
Target:  5'- cGUCACUCGCGCGCGCGAACUUCUCGCg -3'
miRNA:   3'- -CAGUGAGCGCGCGCGCUUGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 47950 0.66 0.710987
Target:  5'- aUCGaUCGCGCGCGCcAACUcggUGCg -3'
miRNA:   3'- cAGUgAGCGCGCGCGcUUGAagaGCG- -5'
24819 5' -55 NC_005284.1 + 6625 0.66 0.721663
Target:  5'- cGUCACUUcgccaGCGCGCGCcgGAAUgggCUCu- -3'
miRNA:   3'- -CAGUGAG-----CGCGCGCG--CUUGaa-GAGcg -5'
24819 5' -55 NC_005284.1 + 48251 0.67 0.689415
Target:  5'- -aCugUCGCGCGCcUGAGCgccUUCGUc -3'
miRNA:   3'- caGugAGCGCGCGcGCUUGaa-GAGCG- -5'
24819 5' -55 NC_005284.1 + 24627 0.67 0.700234
Target:  5'- cGUCACcUGUGCG-GCGAACUgaccgucuUCagUCGCg -3'
miRNA:   3'- -CAGUGaGCGCGCgCGCUUGA--------AG--AGCG- -5'
24819 5' -55 NC_005284.1 + 7250 0.71 0.464436
Target:  5'- uUgGCUCGcCGCGUGCGGGCUUUUUc- -3'
miRNA:   3'- cAgUGAGC-GCGCGCGCUUGAAGAGcg -5'
24819 5' -55 NC_005284.1 + 26305 0.66 0.742738
Target:  5'- -gCACUgCgGCGCGUGCGAGCggaaaGCa -3'
miRNA:   3'- caGUGA-G-CGCGCGCGCUUGaagagCG- -5'
24819 5' -55 NC_005284.1 + 14625 0.66 0.742738
Target:  5'- -aCGCUCGCGCGCuaccucgacgccGUGAAUUUUcCGg -3'
miRNA:   3'- caGUGAGCGCGCG------------CGCUUGAAGaGCg -5'
24819 5' -55 NC_005284.1 + 1254 0.66 0.736458
Target:  5'- aUCACgacUGCGgGCGCGAacaucgaggggccguGCUUCgacaagCGCc -3'
miRNA:   3'- cAGUGa--GCGCgCGCGCU---------------UGAAGa-----GCG- -5'
24819 5' -55 NC_005284.1 + 41035 0.66 0.732251
Target:  5'- uUCACgcauacUGCGCGC-CGAcguUUCUCGCg -3'
miRNA:   3'- cAGUGa-----GCGCGCGcGCUug-AAGAGCG- -5'
24819 5' -55 NC_005284.1 + 11267 0.66 0.721663
Target:  5'- --gGCUCGCGCggcgaagggGgGCGGugUUCauUCGCu -3'
miRNA:   3'- cagUGAGCGCG---------CgCGCUugAAG--AGCG- -5'
24819 5' -55 NC_005284.1 + 30411 0.68 0.612742
Target:  5'- uGUCGaucgucCGCGUGCGCGAcggcgagguGCUgUUUCGCg -3'
miRNA:   3'- -CAGUga----GCGCGCGCGCU---------UGA-AGAGCG- -5'
24819 5' -55 NC_005284.1 + 6486 0.68 0.617133
Target:  5'- --gGCUCGCcgaccuGCGUGCGGAUUUCgagaagcuugcgaaaUCGCa -3'
miRNA:   3'- cagUGAGCG------CGCGCGCUUGAAG---------------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.