Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24819 | 5' | -55 | NC_005284.1 | + | 46802 | 1.13 | 0.000629 |
Target: 5'- cGUCACUCGCGCGCGCGAACUUCUCGCg -3' miRNA: 3'- -CAGUGAGCGCGCGCGCUUGAAGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 35458 | 0.74 | 0.29077 |
Target: 5'- cGUCGCgcuggaucUCGCGCgGUGCGAGCagcuuugCUCGCa -3' miRNA: 3'- -CAGUG--------AGCGCG-CGCGCUUGaa-----GAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 44898 | 0.74 | 0.298121 |
Target: 5'- cGUCGCUCacaacauccggGCGgGUGCGAAUcaCUCGCa -3' miRNA: 3'- -CAGUGAG-----------CGCgCGCGCUUGaaGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 51661 | 0.74 | 0.321032 |
Target: 5'- aUCACgCGCGCGCGaCGAucaGC-UUUCGCg -3' miRNA: 3'- cAGUGaGCGCGCGC-GCU---UGaAGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 16200 | 0.74 | 0.298121 |
Target: 5'- cUCGC-CGCGUGCGCucggccGAACggccgUCUCGCu -3' miRNA: 3'- cAGUGaGCGCGCGCG------CUUGa----AGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 46907 | 0.73 | 0.337025 |
Target: 5'- cGUCgGCUCGCGCacUGCGAuCUUUUCGCc -3' miRNA: 3'- -CAG-UGAGCGCGc-GCGCUuGAAGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 15726 | 0.72 | 0.415968 |
Target: 5'- cGUCugUCGaCGCGCGCGGugUggg-GCg -3' miRNA: 3'- -CAGugAGC-GCGCGCGCUugAagagCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 7250 | 0.71 | 0.464436 |
Target: 5'- uUgGCUCGcCGCGUGCGGGCUUUUUc- -3' miRNA: 3'- cAgUGAGC-GCGCGCGCUUGAAGAGcg -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 26997 | 0.71 | 0.424465 |
Target: 5'- -cCACUCGUccgaaaaGgGCGCGAccGgUUCUCGCa -3' miRNA: 3'- caGUGAGCG-------CgCGCGCU--UgAAGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 112 | 0.71 | 0.454503 |
Target: 5'- -cCGCUCGCGCGC-CGu-CUUCgcCGCg -3' miRNA: 3'- caGUGAGCGCGCGcGCuuGAAGa-GCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 17333 | 0.71 | 0.464436 |
Target: 5'- aUC-CUCGCGC-CGaCGAugUUcCUCGCg -3' miRNA: 3'- cAGuGAGCGCGcGC-GCUugAA-GAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 9915 | 0.71 | 0.444686 |
Target: 5'- cGUCGCUCGCGCuCGCGcAGCagCggCGUa -3' miRNA: 3'- -CAGUGAGCGCGcGCGC-UUGaaGa-GCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 11819 | 0.71 | 0.464436 |
Target: 5'- gGUCGCgCGCGaGCGCGGcuaucucgagcaGCggCUCGCg -3' miRNA: 3'- -CAGUGaGCGCgCGCGCU------------UGaaGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 12826 | 0.7 | 0.494889 |
Target: 5'- -cCGCuUCGCGCcCGCGGACUcUUCGUc -3' miRNA: 3'- caGUG-AGCGCGcGCGCUUGAaGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 17035 | 0.7 | 0.526219 |
Target: 5'- -cCGCUUGcCGCGCGCGGGauuuccUCUCGg -3' miRNA: 3'- caGUGAGC-GCGCGCGCUUga----AGAGCg -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 47716 | 0.7 | 0.515688 |
Target: 5'- -gCGCUCGCGUGCGCaGAagGCcgugCUCGg -3' miRNA: 3'- caGUGAGCGCGCGCG-CU--UGaa--GAGCg -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 1293 | 0.7 | 0.515688 |
Target: 5'- --aGCccCGCGCG-GCGAaccggcgggGCUUCUCGCa -3' miRNA: 3'- cagUGa-GCGCGCgCGCU---------UGAAGAGCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 39693 | 0.69 | 0.546443 |
Target: 5'- -gCACUCGCGCGgauacucUGCGAGCgcgugCGCc -3' miRNA: 3'- caGUGAGCGCGC-------GCGCUUGaaga-GCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 40159 | 0.69 | 0.547514 |
Target: 5'- uUCACggcgUCGagguaGCGCGCGAGCgUUCggCGCc -3' miRNA: 3'- cAGUG----AGCg----CGCGCGCUUG-AAGa-GCG- -5' |
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24819 | 5' | -55 | NC_005284.1 | + | 49366 | 0.69 | 0.558265 |
Target: 5'- gGUCGCagcuUCGCcgaGCGCGAGCUgg-CGCg -3' miRNA: 3'- -CAGUG----AGCGcg-CGCGCUUGAagaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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