Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24822 | 5' | -62.1 | NC_005284.1 | + | 4605 | 0.69 | 0.248876 |
Target: 5'- aUCGCAagagcaucaugaacgUGCCUGCGAcGgUCGGCa-GCGg -3' miRNA: 3'- -AGCGU---------------ACGGGCGCU-CgAGCCGgaCGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 4901 | 0.67 | 0.292441 |
Target: 5'- aUCGUcaGCCCGCGgcGGC-CGGCCUuccGCu -3' miRNA: 3'- -AGCGuaCGGGCGC--UCGaGCCGGA---CGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 5399 | 0.66 | 0.377807 |
Target: 5'- cUGCuUGCCCGUGcggcgcgccAGCUCGcGCUcgGCGa -3' miRNA: 3'- aGCGuACGGGCGC---------UCGAGC-CGGa-CGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 6861 | 0.66 | 0.344917 |
Target: 5'- aUCGUGUGCUCGgaGGGCggCGGUgaGCGu -3' miRNA: 3'- -AGCGUACGGGCg-CUCGa-GCCGgaCGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 7462 | 0.67 | 0.30677 |
Target: 5'- uUCGCGaGCgaCGaaaaggaaucCGAGCUCGGCUUGCc -3' miRNA: 3'- -AGCGUaCGg-GC----------GCUCGAGCCGGACGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 7885 | 0.69 | 0.246416 |
Target: 5'- aUCGCA-GUgCGCGAGCcgaCGGUCgGCGa -3' miRNA: 3'- -AGCGUaCGgGCGCUCGa--GCCGGaCGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 9885 | 0.66 | 0.352943 |
Target: 5'- uUCGCAcccGCCCggauaguuGUGAGCgaCGGCgUGCGc -3' miRNA: 3'- -AGCGUa--CGGG--------CGCUCGa-GCCGgACGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 10045 | 0.66 | 0.352943 |
Target: 5'- gUCGCGcuUGCCaCGCaGGCUCGugaGCgaGCGg -3' miRNA: 3'- -AGCGU--ACGG-GCGcUCGAGC---CGgaCGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 10816 | 0.66 | 0.386353 |
Target: 5'- gCGuCAU-CCCGCGAGCUCcuUCUGCu -3' miRNA: 3'- aGC-GUAcGGGCGCUCGAGccGGACGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 10933 | 0.67 | 0.306041 |
Target: 5'- gCGCAgGCCCGCauGGC-CGGCCUcgucgccggacgaGCGg -3' miRNA: 3'- aGCGUaCGGGCGc-UCGaGCCGGA-------------CGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 12830 | 0.66 | 0.344917 |
Target: 5'- uUCGC--GCCCGCGGaCUCuucGUCUGCGa -3' miRNA: 3'- -AGCGuaCGGGCGCUcGAGc--CGGACGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 14836 | 0.67 | 0.320875 |
Target: 5'- aUCGCG-GCCC-CGAGUgCGGCUauaccggUGCGg -3' miRNA: 3'- -AGCGUaCGGGcGCUCGaGCCGG-------ACGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 21741 | 0.69 | 0.246416 |
Target: 5'- gUCGCA-GCCUGCGGGCUgcucuugccgcUGGCaCUgaGCGg -3' miRNA: 3'- -AGCGUaCGGGCGCUCGA-----------GCCG-GA--CGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 22244 | 0.68 | 0.278641 |
Target: 5'- gUCGagGUGUUCGCGGGCggggCGGCgCUGUa -3' miRNA: 3'- -AGCg-UACGGGCGCUCGa---GCCG-GACGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 23880 | 0.69 | 0.234416 |
Target: 5'- gCGCccGCCCGaugcaucccgacUGGGCUCGGUcgCUGCGc -3' miRNA: 3'- aGCGuaCGGGC------------GCUCGAGCCG--GACGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 27814 | 0.68 | 0.271937 |
Target: 5'- -gGCGUGCCCGCGAagaGCUCaaGUCUaaGCGc -3' miRNA: 3'- agCGUACGGGCGCU---CGAGc-CGGA--CGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 29691 | 0.73 | 0.12545 |
Target: 5'- aUCGCuuuuUGCCggugacgauCGCGAGgUCGGCCgGCGu -3' miRNA: 3'- -AGCGu---ACGG---------GCGCUCgAGCCGGaCGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 30659 | 0.71 | 0.176951 |
Target: 5'- gUGCGUGCggCCGuCGAGCagcCGGCCgGCGg -3' miRNA: 3'- aGCGUACG--GGC-GCUCGa--GCCGGaCGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 32772 | 0.7 | 0.195737 |
Target: 5'- gUCGC--GCUCGCGcGCcucugccggugcgUCGGCCUGCGc -3' miRNA: 3'- -AGCGuaCGGGCGCuCG-------------AGCCGGACGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 33219 | 0.67 | 0.30677 |
Target: 5'- gCGCGUcgaacGCCCGCG----CGGCCUGCu -3' miRNA: 3'- aGCGUA-----CGGGCGCucgaGCCGGACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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