miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24822 5' -62.1 NC_005284.1 + 47792 0.66 0.377807
Target:  5'- cUCGCGgagGCgacggGCGAGCgcuuggCGGCgCUGCGa -3'
miRNA:   3'- -AGCGUa--CGgg---CGCUCGa-----GCCG-GACGC- -5'
24822 5' -62.1 NC_005284.1 + 46907 0.67 0.314134
Target:  5'- uUCGCAUGCUgGCuaauGGGCU-GGCCUacGUGg -3'
miRNA:   3'- -AGCGUACGGgCG----CUCGAgCCGGA--CGC- -5'
24822 5' -62.1 NC_005284.1 + 47215 0.67 0.314134
Target:  5'- cCGCGUGCaggGCGuGCUCGaGCCgGUGc -3'
miRNA:   3'- aGCGUACGgg-CGCuCGAGC-CGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 14836 0.67 0.320875
Target:  5'- aUCGCG-GCCC-CGAGUgCGGCUauaccggUGCGg -3'
miRNA:   3'- -AGCGUaCGGGcGCUCGaGCCGG-------ACGC- -5'
24822 5' -62.1 NC_005284.1 + 45567 0.66 0.337022
Target:  5'- gCGCGUcGCCCGCGcaCUCGGCUauCGa -3'
miRNA:   3'- aGCGUA-CGGGCGCucGAGCCGGacGC- -5'
24822 5' -62.1 NC_005284.1 + 6861 0.66 0.344917
Target:  5'- aUCGUGUGCUCGgaGGGCggCGGUgaGCGu -3'
miRNA:   3'- -AGCGUACGGGCg-CUCGa-GCCGgaCGC- -5'
24822 5' -62.1 NC_005284.1 + 12830 0.66 0.344917
Target:  5'- uUCGC--GCCCGCGGaCUCuucGUCUGCGa -3'
miRNA:   3'- -AGCGuaCGGGCGCUcGAGc--CGGACGC- -5'
24822 5' -62.1 NC_005284.1 + 10045 0.66 0.352943
Target:  5'- gUCGCGcuUGCCaCGCaGGCUCGugaGCgaGCGg -3'
miRNA:   3'- -AGCGU--ACGG-GCGcUCGAGC---CGgaCGC- -5'
24822 5' -62.1 NC_005284.1 + 45536 0.66 0.352943
Target:  5'- aCGCAUGCuCCGCGcuCUauGCCgccGCGu -3'
miRNA:   3'- aGCGUACG-GGCGCucGAgcCGGa--CGC- -5'
24822 5' -62.1 NC_005284.1 + 33963 0.67 0.30677
Target:  5'- cUCGUcgGCCgGCGcuGCUgCGGgCUGCu -3'
miRNA:   3'- -AGCGuaCGGgCGCu-CGA-GCCgGACGc -5'
24822 5' -62.1 NC_005284.1 + 7462 0.67 0.30677
Target:  5'- uUCGCGaGCgaCGaaaaggaaucCGAGCUCGGCUUGCc -3'
miRNA:   3'- -AGCGUaCGg-GC----------GCUCGAGCCGGACGc -5'
24822 5' -62.1 NC_005284.1 + 10933 0.67 0.306041
Target:  5'- gCGCAgGCCCGCauGGC-CGGCCUcgucgccggacgaGCGg -3'
miRNA:   3'- aGCGUaCGGGCGc-UCGaGCCGGA-------------CGC- -5'
24822 5' -62.1 NC_005284.1 + 30659 0.71 0.176951
Target:  5'- gUGCGUGCggCCGuCGAGCagcCGGCCgGCGg -3'
miRNA:   3'- aGCGUACG--GGC-GCUCGa--GCCGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 32772 0.7 0.195737
Target:  5'- gUCGC--GCUCGCGcGCcucugccggugcgUCGGCCUGCGc -3'
miRNA:   3'- -AGCGuaCGGGCGCuCG-------------AGCCGGACGC- -5'
24822 5' -62.1 NC_005284.1 + 48763 0.69 0.222912
Target:  5'- -gGCGUGCgCCGCGAGUUgcguugcaUGGCgaaCUGCGa -3'
miRNA:   3'- agCGUACG-GGCGCUCGA--------GCCG---GACGC- -5'
24822 5' -62.1 NC_005284.1 + 21741 0.69 0.246416
Target:  5'- gUCGCA-GCCUGCGGGCUgcucuugccgcUGGCaCUgaGCGg -3'
miRNA:   3'- -AGCGUaCGGGCGCUCGA-----------GCCG-GA--CGC- -5'
24822 5' -62.1 NC_005284.1 + 7885 0.69 0.246416
Target:  5'- aUCGCA-GUgCGCGAGCcgaCGGUCgGCGa -3'
miRNA:   3'- -AGCGUaCGgGCGCUCGa--GCCGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 4605 0.69 0.248876
Target:  5'- aUCGCAagagcaucaugaacgUGCCUGCGAcGgUCGGCa-GCGg -3'
miRNA:   3'- -AGCGU---------------ACGGGCGCU-CgAGCCGgaCGC- -5'
24822 5' -62.1 NC_005284.1 + 39172 0.68 0.278641
Target:  5'- gCGCAUGCCUuCGAGCa-GGCC-GCc -3'
miRNA:   3'- aGCGUACGGGcGCUCGagCCGGaCGc -5'
24822 5' -62.1 NC_005284.1 + 22244 0.68 0.278641
Target:  5'- gUCGagGUGUUCGCGGGCggggCGGCgCUGUa -3'
miRNA:   3'- -AGCg-UACGGGCGCUCGa---GCCG-GACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.