miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24822 5' -62.1 NC_005284.1 + 39172 0.68 0.278641
Target:  5'- gCGCAUGCCUuCGAGCa-GGCC-GCc -3'
miRNA:   3'- aGCGUACGGGcGCUCGagCCGGaCGc -5'
24822 5' -62.1 NC_005284.1 + 22244 0.68 0.278641
Target:  5'- gUCGagGUGUUCGCGGGCggggCGGCgCUGUa -3'
miRNA:   3'- -AGCg-UACGGGCGCUCGa---GCCG-GACGc -5'
24822 5' -62.1 NC_005284.1 + 10933 0.67 0.306041
Target:  5'- gCGCAgGCCCGCauGGC-CGGCCUcgucgccggacgaGCGg -3'
miRNA:   3'- aGCGUaCGGGCGc-UCGaGCCGGA-------------CGC- -5'
24822 5' -62.1 NC_005284.1 + 33219 0.67 0.30677
Target:  5'- gCGCGUcgaacGCCCGCG----CGGCCUGCu -3'
miRNA:   3'- aGCGUA-----CGGGCGCucgaGCCGGACGc -5'
24822 5' -62.1 NC_005284.1 + 41954 0.67 0.299539
Target:  5'- uUCGCAgacgaagaGUCCGCGGGCgcgaagCGGCg-GCGu -3'
miRNA:   3'- -AGCGUa-------CGGGCGCUCGa-----GCCGgaCGC- -5'
24822 5' -62.1 NC_005284.1 + 36687 0.67 0.298824
Target:  5'- aCGCGauacugcUGCgCCGCGAGCUcgCGGCUUuCGa -3'
miRNA:   3'- aGCGU-------ACG-GGCGCUCGA--GCCGGAcGC- -5'
24822 5' -62.1 NC_005284.1 + 52209 0.67 0.297396
Target:  5'- -aGCAUGCUCGCGAcGaucacuucccagaaCUCGGCC-GCa -3'
miRNA:   3'- agCGUACGGGCGCU-C--------------GAGCCGGaCGc -5'
24822 5' -62.1 NC_005284.1 + 4901 0.67 0.292441
Target:  5'- aUCGUcaGCCCGCGgcGGC-CGGCCUuccGCu -3'
miRNA:   3'- -AGCGuaCGGGCGC--UCGaGCCGGA---CGc -5'
24822 5' -62.1 NC_005284.1 + 27814 0.68 0.271937
Target:  5'- -gGCGUGCCCGCGAagaGCUCaaGUCUaaGCGc -3'
miRNA:   3'- agCGUACGGGCGCU---CGAGc-CGGA--CGC- -5'
24822 5' -62.1 NC_005284.1 + 44782 0.68 0.265364
Target:  5'- gCGCAaGgCCGCGGuccGuCUCGGCCaGCGa -3'
miRNA:   3'- aGCGUaCgGGCGCU---C-GAGCCGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 43173 0.67 0.32163
Target:  5'- uUCGCGcUGCacgucaCGCuGAcGCUCGGCC-GCGu -3'
miRNA:   3'- -AGCGU-ACGg-----GCG-CU-CGAGCCGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 33611 0.66 0.337022
Target:  5'- cCGCGUGCUCGaUGAgccguuGCUCGaGCCgcgcGCGg -3'
miRNA:   3'- aGCGUACGGGC-GCU------CGAGC-CGGa---CGC- -5'
24822 5' -62.1 NC_005284.1 + 9885 0.66 0.352943
Target:  5'- uUCGCAcccGCCCggauaguuGUGAGCgaCGGCgUGCGc -3'
miRNA:   3'- -AGCGUa--CGGG--------CGCUCGa-GCCGgACGC- -5'
24822 5' -62.1 NC_005284.1 + 45852 0.66 0.369389
Target:  5'- aCGCGuUGUuuGCGAuccgcugauacaGCUCGGCUgucGCGu -3'
miRNA:   3'- aGCGU-ACGggCGCU------------CGAGCCGGa--CGC- -5'
24822 5' -62.1 NC_005284.1 + 36105 0.66 0.369389
Target:  5'- gUCGCGUcgUCGCGA-UUCGGCgUGCGg -3'
miRNA:   3'- -AGCGUAcgGGCGCUcGAGCCGgACGC- -5'
24822 5' -62.1 NC_005284.1 + 44960 0.66 0.375268
Target:  5'- -gGCGUGCCCGUGAuGCgcgCGccgauuuccugacuGCCgGCGa -3'
miRNA:   3'- agCGUACGGGCGCU-CGa--GC--------------CGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 40296 0.66 0.377807
Target:  5'- gUCGgAUGUCUGCucgaAGCccgCGGCCUGUa -3'
miRNA:   3'- -AGCgUACGGGCGc---UCGa--GCCGGACGc -5'
24822 5' -62.1 NC_005284.1 + 5399 0.66 0.377807
Target:  5'- cUGCuUGCCCGUGcggcgcgccAGCUCGcGCUcgGCGa -3'
miRNA:   3'- aGCGuACGGGCGC---------UCGAGC-CGGa-CGC- -5'
24822 5' -62.1 NC_005284.1 + 45209 0.66 0.377807
Target:  5'- gCGCGaucGCCCugcgcuuugGCGAGCgCuGCCUGCGc -3'
miRNA:   3'- aGCGUa--CGGG---------CGCUCGaGcCGGACGC- -5'
24822 5' -62.1 NC_005284.1 + 45135 1.07 0.000278
Target:  5'- cUCGCAUGCCCGCGAGCUCGGCCUGCGc -3'
miRNA:   3'- -AGCGUACGGGCGCUCGAGCCGGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.