miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24822 5' -62.1 NC_005284.1 + 36687 0.67 0.298824
Target:  5'- aCGCGauacugcUGCgCCGCGAGCUcgCGGCUUuCGa -3'
miRNA:   3'- aGCGU-------ACG-GGCGCUCGA--GCCGGAcGC- -5'
24822 5' -62.1 NC_005284.1 + 41954 0.67 0.299539
Target:  5'- uUCGCAgacgaagaGUCCGCGGGCgcgaagCGGCg-GCGu -3'
miRNA:   3'- -AGCGUa-------CGGGCGCUCGa-----GCCGgaCGC- -5'
24822 5' -62.1 NC_005284.1 + 10933 0.67 0.306041
Target:  5'- gCGCAgGCCCGCauGGC-CGGCCUcgucgccggacgaGCGg -3'
miRNA:   3'- aGCGUaCGGGCGc-UCGaGCCGGA-------------CGC- -5'
24822 5' -62.1 NC_005284.1 + 33219 0.67 0.30677
Target:  5'- gCGCGUcgaacGCCCGCG----CGGCCUGCu -3'
miRNA:   3'- aGCGUA-----CGGGCGCucgaGCCGGACGc -5'
24822 5' -62.1 NC_005284.1 + 7462 0.67 0.30677
Target:  5'- uUCGCGaGCgaCGaaaaggaaucCGAGCUCGGCUUGCc -3'
miRNA:   3'- -AGCGUaCGg-GC----------GCUCGAGCCGGACGc -5'
24822 5' -62.1 NC_005284.1 + 33963 0.67 0.30677
Target:  5'- cUCGUcgGCCgGCGcuGCUgCGGgCUGCu -3'
miRNA:   3'- -AGCGuaCGGgCGCu-CGA-GCCgGACGc -5'
24822 5' -62.1 NC_005284.1 + 47215 0.67 0.314134
Target:  5'- cCGCGUGCaggGCGuGCUCGaGCCgGUGc -3'
miRNA:   3'- aGCGUACGgg-CGCuCGAGC-CGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 46907 0.67 0.314134
Target:  5'- uUCGCAUGCUgGCuaauGGGCU-GGCCUacGUGg -3'
miRNA:   3'- -AGCGUACGGgCG----CUCGAgCCGGA--CGC- -5'
24822 5' -62.1 NC_005284.1 + 14836 0.67 0.320875
Target:  5'- aUCGCG-GCCC-CGAGUgCGGCUauaccggUGCGg -3'
miRNA:   3'- -AGCGUaCGGGcGCUCGaGCCGG-------ACGC- -5'
24822 5' -62.1 NC_005284.1 + 43173 0.67 0.32163
Target:  5'- uUCGCGcUGCacgucaCGCuGAcGCUCGGCC-GCGu -3'
miRNA:   3'- -AGCGU-ACGg-----GCG-CU-CGAGCCGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 45567 0.66 0.337022
Target:  5'- gCGCGUcGCCCGCGcaCUCGGCUauCGa -3'
miRNA:   3'- aGCGUA-CGGGCGCucGAGCCGGacGC- -5'
24822 5' -62.1 NC_005284.1 + 33611 0.66 0.337022
Target:  5'- cCGCGUGCUCGaUGAgccguuGCUCGaGCCgcgcGCGg -3'
miRNA:   3'- aGCGUACGGGC-GCU------CGAGC-CGGa---CGC- -5'
24822 5' -62.1 NC_005284.1 + 6861 0.66 0.344917
Target:  5'- aUCGUGUGCUCGgaGGGCggCGGUgaGCGu -3'
miRNA:   3'- -AGCGUACGGGCg-CUCGa-GCCGgaCGC- -5'
24822 5' -62.1 NC_005284.1 + 12830 0.66 0.344917
Target:  5'- uUCGC--GCCCGCGGaCUCuucGUCUGCGa -3'
miRNA:   3'- -AGCGuaCGGGCGCUcGAGc--CGGACGC- -5'
24822 5' -62.1 NC_005284.1 + 9885 0.66 0.352943
Target:  5'- uUCGCAcccGCCCggauaguuGUGAGCgaCGGCgUGCGc -3'
miRNA:   3'- -AGCGUa--CGGG--------CGCUCGa-GCCGgACGC- -5'
24822 5' -62.1 NC_005284.1 + 45536 0.66 0.352943
Target:  5'- aCGCAUGCuCCGCGcuCUauGCCgccGCGu -3'
miRNA:   3'- aGCGUACG-GGCGCucGAgcCGGa--CGC- -5'
24822 5' -62.1 NC_005284.1 + 10045 0.66 0.352943
Target:  5'- gUCGCGcuUGCCaCGCaGGCUCGugaGCgaGCGg -3'
miRNA:   3'- -AGCGU--ACGG-GCGcUCGAGC---CGgaCGC- -5'
24822 5' -62.1 NC_005284.1 + 45852 0.66 0.369389
Target:  5'- aCGCGuUGUuuGCGAuccgcugauacaGCUCGGCUgucGCGu -3'
miRNA:   3'- aGCGU-ACGggCGCU------------CGAGCCGGa--CGC- -5'
24822 5' -62.1 NC_005284.1 + 36105 0.66 0.369389
Target:  5'- gUCGCGUcgUCGCGA-UUCGGCgUGCGg -3'
miRNA:   3'- -AGCGUAcgGGCGCUcGAGCCGgACGC- -5'
24822 5' -62.1 NC_005284.1 + 44960 0.66 0.375268
Target:  5'- -gGCGUGCCCGUGAuGCgcgCGccgauuuccugacuGCCgGCGa -3'
miRNA:   3'- agCGUACGGGCGCU-CGa--GC--------------CGGaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.