miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24822 5' -62.1 NC_005284.1 + 45135 1.07 0.000278
Target:  5'- cUCGCAUGCCCGCGAGCUCGGCCUGCGc -3'
miRNA:   3'- -AGCGUACGGGCGCUCGAGCCGGACGC- -5'
24822 5' -62.1 NC_005284.1 + 29691 0.73 0.12545
Target:  5'- aUCGCuuuuUGCCggugacgauCGCGAGgUCGGCCgGCGu -3'
miRNA:   3'- -AGCGu---ACGG---------GCGCUCgAGCCGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 39423 0.71 0.167952
Target:  5'- gUCGUcgAUGCCgauCGAGCcaUCGGCCUGCa -3'
miRNA:   3'- -AGCG--UACGGgc-GCUCG--AGCCGGACGc -5'
24822 5' -62.1 NC_005284.1 + 42912 0.71 0.172399
Target:  5'- cCGCAUcGCCCGCuucacgccGAcGCgccagUCGGCCUGCa -3'
miRNA:   3'- aGCGUA-CGGGCG--------CU-CG-----AGCCGGACGc -5'
24822 5' -62.1 NC_005284.1 + 30659 0.71 0.176951
Target:  5'- gUGCGUGCggCCGuCGAGCagcCGGCCgGCGg -3'
miRNA:   3'- aGCGUACG--GGC-GCUCGa--GCCGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 38559 0.71 0.176951
Target:  5'- uUCGcCGUcCCCGCGAgGC-CGGCCUGUu -3'
miRNA:   3'- -AGC-GUAcGGGCGCU-CGaGCCGGACGc -5'
24822 5' -62.1 NC_005284.1 + 32772 0.7 0.195737
Target:  5'- gUCGC--GCUCGCGcGCcucugccggugcgUCGGCCUGCGc -3'
miRNA:   3'- -AGCGuaCGGGCGCuCG-------------AGCCGGACGC- -5'
24822 5' -62.1 NC_005284.1 + 44715 0.69 0.222349
Target:  5'- gUCGCGgucGCCgCGCGuuccGCUCGcucacgaGCCUGCGu -3'
miRNA:   3'- -AGCGUa--CGG-GCGCu---CGAGC-------CGGACGC- -5'
24822 5' -62.1 NC_005284.1 + 48763 0.69 0.222912
Target:  5'- -gGCGUGCgCCGCGAGUUgcguugcaUGGCgaaCUGCGa -3'
miRNA:   3'- agCGUACG-GGCGCUCGA--------GCCG---GACGC- -5'
24822 5' -62.1 NC_005284.1 + 33855 0.69 0.234416
Target:  5'- -gGCGUGCa-GCGAGCUCGaUCUGCu -3'
miRNA:   3'- agCGUACGggCGCUCGAGCcGGACGc -5'
24822 5' -62.1 NC_005284.1 + 23880 0.69 0.234416
Target:  5'- gCGCccGCCCGaugcaucccgacUGGGCUCGGUcgCUGCGc -3'
miRNA:   3'- aGCGuaCGGGC------------GCUCGAGCCG--GACGC- -5'
24822 5' -62.1 NC_005284.1 + 21741 0.69 0.246416
Target:  5'- gUCGCA-GCCUGCGGGCUgcucuugccgcUGGCaCUgaGCGg -3'
miRNA:   3'- -AGCGUaCGGGCGCUCGA-----------GCCG-GA--CGC- -5'
24822 5' -62.1 NC_005284.1 + 7885 0.69 0.246416
Target:  5'- aUCGCA-GUgCGCGAGCcgaCGGUCgGCGa -3'
miRNA:   3'- -AGCGUaCGgGCGCUCGa--GCCGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 4605 0.69 0.248876
Target:  5'- aUCGCAagagcaucaugaacgUGCCUGCGAcGgUCGGCa-GCGg -3'
miRNA:   3'- -AGCGU---------------ACGGGCGCU-CgAGCCGgaCGC- -5'
24822 5' -62.1 NC_005284.1 + 44782 0.68 0.265364
Target:  5'- gCGCAaGgCCGCGGuccGuCUCGGCCaGCGa -3'
miRNA:   3'- aGCGUaCgGGCGCU---C-GAGCCGGaCGC- -5'
24822 5' -62.1 NC_005284.1 + 27814 0.68 0.271937
Target:  5'- -gGCGUGCCCGCGAagaGCUCaaGUCUaaGCGc -3'
miRNA:   3'- agCGUACGGGCGCU---CGAGc-CGGA--CGC- -5'
24822 5' -62.1 NC_005284.1 + 22244 0.68 0.278641
Target:  5'- gUCGagGUGUUCGCGGGCggggCGGCgCUGUa -3'
miRNA:   3'- -AGCg-UACGGGCGCUCGa---GCCG-GACGc -5'
24822 5' -62.1 NC_005284.1 + 39172 0.68 0.278641
Target:  5'- gCGCAUGCCUuCGAGCa-GGCC-GCc -3'
miRNA:   3'- aGCGUACGGGcGCUCGagCCGGaCGc -5'
24822 5' -62.1 NC_005284.1 + 4901 0.67 0.292441
Target:  5'- aUCGUcaGCCCGCGgcGGC-CGGCCUuccGCu -3'
miRNA:   3'- -AGCGuaCGGGCGC--UCGaGCCGGA---CGc -5'
24822 5' -62.1 NC_005284.1 + 52209 0.67 0.297396
Target:  5'- -aGCAUGCUCGCGAcGaucacuucccagaaCUCGGCC-GCa -3'
miRNA:   3'- agCGUACGGGCGCU-C--------------GAGCCGGaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.