Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24822 | 5' | -62.1 | NC_005284.1 | + | 46907 | 0.67 | 0.314134 |
Target: 5'- uUCGCAUGCUgGCuaauGGGCU-GGCCUacGUGg -3' miRNA: 3'- -AGCGUACGGgCG----CUCGAgCCGGA--CGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 33963 | 0.67 | 0.30677 |
Target: 5'- cUCGUcgGCCgGCGcuGCUgCGGgCUGCu -3' miRNA: 3'- -AGCGuaCGGgCGCu-CGA-GCCgGACGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 33219 | 0.67 | 0.30677 |
Target: 5'- gCGCGUcgaacGCCCGCG----CGGCCUGCu -3' miRNA: 3'- aGCGUA-----CGGGCGCucgaGCCGGACGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 7462 | 0.67 | 0.30677 |
Target: 5'- uUCGCGaGCgaCGaaaaggaaucCGAGCUCGGCUUGCc -3' miRNA: 3'- -AGCGUaCGg-GC----------GCUCGAGCCGGACGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 10933 | 0.67 | 0.306041 |
Target: 5'- gCGCAgGCCCGCauGGC-CGGCCUcgucgccggacgaGCGg -3' miRNA: 3'- aGCGUaCGGGCGc-UCGaGCCGGA-------------CGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 41954 | 0.67 | 0.299539 |
Target: 5'- uUCGCAgacgaagaGUCCGCGGGCgcgaagCGGCg-GCGu -3' miRNA: 3'- -AGCGUa-------CGGGCGCUCGa-----GCCGgaCGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 36687 | 0.67 | 0.298824 |
Target: 5'- aCGCGauacugcUGCgCCGCGAGCUcgCGGCUUuCGa -3' miRNA: 3'- aGCGU-------ACG-GGCGCUCGA--GCCGGAcGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 52209 | 0.67 | 0.297396 |
Target: 5'- -aGCAUGCUCGCGAcGaucacuucccagaaCUCGGCC-GCa -3' miRNA: 3'- agCGUACGGGCGCU-C--------------GAGCCGGaCGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 4901 | 0.67 | 0.292441 |
Target: 5'- aUCGUcaGCCCGCGgcGGC-CGGCCUuccGCu -3' miRNA: 3'- -AGCGuaCGGGCGC--UCGaGCCGGA---CGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 22244 | 0.68 | 0.278641 |
Target: 5'- gUCGagGUGUUCGCGGGCggggCGGCgCUGUa -3' miRNA: 3'- -AGCg-UACGGGCGCUCGa---GCCG-GACGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 39172 | 0.68 | 0.278641 |
Target: 5'- gCGCAUGCCUuCGAGCa-GGCC-GCc -3' miRNA: 3'- aGCGUACGGGcGCUCGagCCGGaCGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 27814 | 0.68 | 0.271937 |
Target: 5'- -gGCGUGCCCGCGAagaGCUCaaGUCUaaGCGc -3' miRNA: 3'- agCGUACGGGCGCU---CGAGc-CGGA--CGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 44782 | 0.68 | 0.265364 |
Target: 5'- gCGCAaGgCCGCGGuccGuCUCGGCCaGCGa -3' miRNA: 3'- aGCGUaCgGGCGCU---C-GAGCCGGaCGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 4605 | 0.69 | 0.248876 |
Target: 5'- aUCGCAagagcaucaugaacgUGCCUGCGAcGgUCGGCa-GCGg -3' miRNA: 3'- -AGCGU---------------ACGGGCGCU-CgAGCCGgaCGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 21741 | 0.69 | 0.246416 |
Target: 5'- gUCGCA-GCCUGCGGGCUgcucuugccgcUGGCaCUgaGCGg -3' miRNA: 3'- -AGCGUaCGGGCGCUCGA-----------GCCG-GA--CGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 7885 | 0.69 | 0.246416 |
Target: 5'- aUCGCA-GUgCGCGAGCcgaCGGUCgGCGa -3' miRNA: 3'- -AGCGUaCGgGCGCUCGa--GCCGGaCGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 33855 | 0.69 | 0.234416 |
Target: 5'- -gGCGUGCa-GCGAGCUCGaUCUGCu -3' miRNA: 3'- agCGUACGggCGCUCGAGCcGGACGc -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 23880 | 0.69 | 0.234416 |
Target: 5'- gCGCccGCCCGaugcaucccgacUGGGCUCGGUcgCUGCGc -3' miRNA: 3'- aGCGuaCGGGC------------GCUCGAGCCG--GACGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 48763 | 0.69 | 0.222912 |
Target: 5'- -gGCGUGCgCCGCGAGUUgcguugcaUGGCgaaCUGCGa -3' miRNA: 3'- agCGUACG-GGCGCUCGA--------GCCG---GACGC- -5' |
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24822 | 5' | -62.1 | NC_005284.1 | + | 44715 | 0.69 | 0.222349 |
Target: 5'- gUCGCGgucGCCgCGCGuuccGCUCGcucacgaGCCUGCGu -3' miRNA: 3'- -AGCGUa--CGG-GCGCu---CGAGC-------CGGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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