miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 5' -57.5 NC_005284.1 + 9495 0.67 0.525282
Target:  5'- -cGCAGGCgGCGACA--GCGUgggUCGGCg -3'
miRNA:   3'- acCGUUCG-CGCUGUagUGCG---AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 52992 0.67 0.514796
Target:  5'- aGGCAAuCGCGguggGCAUCGCGUUUGccGCUg -3'
miRNA:   3'- aCCGUUcGCGC----UGUAGUGCGAGC--CGA- -5'
24823 5' -57.5 NC_005284.1 + 15323 0.67 0.504395
Target:  5'- cGGCAu-CGCGAaaugggugauCGUguCGCUCGGCg -3'
miRNA:   3'- aCCGUucGCGCU----------GUAguGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 49272 0.67 0.504395
Target:  5'- aGGCGA-CGUGACGaagCGCGCUucaCGGCc -3'
miRNA:   3'- aCCGUUcGCGCUGUa--GUGCGA---GCCGa -5'
24823 5' -57.5 NC_005284.1 + 26332 0.67 0.504395
Target:  5'- aUGGaCAuucuucAGCGCGGCAcggUCaACGC-CGGCg -3'
miRNA:   3'- -ACC-GU------UCGCGCUGU---AG-UGCGaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 28605 0.67 0.494086
Target:  5'- ---aAAGUGCGACAgguuggCGCGUUUGGCa -3'
miRNA:   3'- accgUUCGCGCUGUa-----GUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 33180 0.67 0.49306
Target:  5'- cGGC--GCGCGAgAUCuugcccaACGCUuCGGCa -3'
miRNA:   3'- aCCGuuCGCGCUgUAG-------UGCGA-GCCGa -5'
24823 5' -57.5 NC_005284.1 + 47751 0.67 0.484891
Target:  5'- cGGCGGcGCGCGuACGUC-CGCguaagcagaucgaggCGGCg -3'
miRNA:   3'- aCCGUU-CGCGC-UGUAGuGCGa--------------GCCGa -5'
24823 5' -57.5 NC_005284.1 + 899 0.67 0.483874
Target:  5'- aGGCAAGCGaCGACGgccgC-CGCauccCGGCc -3'
miRNA:   3'- aCCGUUCGC-GCUGUa---GuGCGa---GCCGa -5'
24823 5' -57.5 NC_005284.1 + 8023 0.68 0.473765
Target:  5'- aGGCGAauGCGCGGCuguucguucguGUCGUGUUCGGUg -3'
miRNA:   3'- aCCGUU--CGCGCUG-----------UAGUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 21408 0.68 0.473765
Target:  5'- aUGGCGAGcCGuCGGCA--GCGC-CGGCc -3'
miRNA:   3'- -ACCGUUC-GC-GCUGUagUGCGaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 9570 0.68 0.463763
Target:  5'- aGGCAgcgcucgccaaAGCGCagGGCgAUCGCGCUgccgCGGCg -3'
miRNA:   3'- aCCGU-----------UCGCG--CUG-UAGUGCGA----GCCGa -5'
24823 5' -57.5 NC_005284.1 + 2028 0.68 0.453872
Target:  5'- cGGCGGGC-CGAuucCAUCACGa-CGGCa -3'
miRNA:   3'- aCCGUUCGcGCU---GUAGUGCgaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 36520 0.68 0.453872
Target:  5'- aGGC-AGCGUuGCAUgACuGCUUGGCa -3'
miRNA:   3'- aCCGuUCGCGcUGUAgUG-CGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 7638 0.68 0.453872
Target:  5'- cGGCAuGGUGCGuCAguaCACGUgggCGGCg -3'
miRNA:   3'- aCCGU-UCGCGCuGUa--GUGCGa--GCCGa -5'
24823 5' -57.5 NC_005284.1 + 30924 0.68 0.444098
Target:  5'- gGGCGGGCGCcguGGCGcuuUCGcCGC-CGGCg -3'
miRNA:   3'- aCCGUUCGCG---CUGU---AGU-GCGaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 40171 0.68 0.444098
Target:  5'- aGGUAGcGCGCGA----GCGUUCGGCg -3'
miRNA:   3'- aCCGUU-CGCGCUguagUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 47708 0.68 0.424909
Target:  5'- gGGCAcGCGCGcucGCGUgCGCagaaggccguGCUCGGCg -3'
miRNA:   3'- aCCGUuCGCGC---UGUA-GUG----------CGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 17893 0.68 0.424909
Target:  5'- cGGCGGGCGCauc--CGCGCagCGGCUg -3'
miRNA:   3'- aCCGUUCGCGcuguaGUGCGa-GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 18999 0.68 0.424909
Target:  5'- aGGCucaaugcuGGCGUGugGUCGCuGCaggCGGCg -3'
miRNA:   3'- aCCGu-------UCGCGCugUAGUG-CGa--GCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.