miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 5' -57.5 NC_005284.1 + 10751 0.72 0.249796
Target:  5'- cGGCAAGgGgGGCcgCcgaggGCGUUCGGCUg -3'
miRNA:   3'- aCCGUUCgCgCUGuaG-----UGCGAGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 11824 0.69 0.388064
Target:  5'- cGcGCGAGCGCGGCuAUCucgaGCagCGGCUc -3'
miRNA:   3'- aC-CGUUCGCGCUG-UAGug--CGa-GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 12153 0.75 0.172129
Target:  5'- cGGCAAGCGCGGCuGUCggcucgaACGCcuaCGGCUu -3'
miRNA:   3'- aCCGUUCGCGCUG-UAG-------UGCGa--GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 14007 0.66 0.535849
Target:  5'- cGGUAAGCGgGGCGUgACGUaUCuGCa -3'
miRNA:   3'- aCCGUUCGCgCUGUAgUGCG-AGcCGa -5'
24823 5' -57.5 NC_005284.1 + 14056 0.66 0.557195
Target:  5'- cGGCAGGCugGCGuCAUCGCGaacgagUGGUg -3'
miRNA:   3'- aCCGUUCG--CGCuGUAGUGCga----GCCGa -5'
24823 5' -57.5 NC_005284.1 + 15323 0.67 0.504395
Target:  5'- cGGCAu-CGCGAaaugggugauCGUguCGCUCGGCg -3'
miRNA:   3'- aCCGUucGCGCU----------GUAguGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 15482 0.71 0.29812
Target:  5'- cUGGUaucucgccGAGCGCGGCGUCGCGUuacccgacuUCGaGCg -3'
miRNA:   3'- -ACCG--------UUCGCGCUGUAGUGCG---------AGC-CGa -5'
24823 5' -57.5 NC_005284.1 + 15806 0.66 0.550764
Target:  5'- gUGaGCGAGaCGCuucGCAUgauaaggcuguacggCACGCUCGGCg -3'
miRNA:   3'- -AC-CGUUC-GCGc--UGUA---------------GUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 16025 0.69 0.415502
Target:  5'- cGGuCGGGCGCGACGagauccgcaUUGCGC-CGGUa -3'
miRNA:   3'- aCC-GUUCGCGCUGU---------AGUGCGaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 16065 0.66 0.58964
Target:  5'- cGGCAguaAGCGCGGggggcucuuCAaCACGauuCUCGGCg -3'
miRNA:   3'- aCCGU---UCGCGCU---------GUaGUGC---GAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 16174 0.69 0.379186
Target:  5'- gGGCucGGCGCGuCgAUgGCGCUgGGCg -3'
miRNA:   3'- aCCGu-UCGCGCuG-UAgUGCGAgCCGa -5'
24823 5' -57.5 NC_005284.1 + 17893 0.68 0.424909
Target:  5'- cGGCGGGCGCauc--CGCGCagCGGCUg -3'
miRNA:   3'- aCCGUUCGCGcuguaGUGCGa-GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 18482 0.72 0.249796
Target:  5'- gGGUgcGCGcCGAgAaCGCGCUCGGCg -3'
miRNA:   3'- aCCGuuCGC-GCUgUaGUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 18999 0.68 0.424909
Target:  5'- aGGCucaaugcuGGCGUGugGUCGCuGCaggCGGCg -3'
miRNA:   3'- aCCGu-------UCGCGCugUAGUG-CGa--GCCGa -5'
24823 5' -57.5 NC_005284.1 + 19464 0.69 0.414569
Target:  5'- cGGCAGGCGCuGAUcggugcgggcuggAUCACGaacgcgaugaUCGGCa -3'
miRNA:   3'- aCCGUUCGCG-CUG-------------UAGUGCg---------AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 19798 0.66 0.567961
Target:  5'- cGGC-AGCGCGGCGgcagaucucUCGCGCggGGa- -3'
miRNA:   3'- aCCGuUCGCGCUGU---------AGUGCGagCCga -5'
24823 5' -57.5 NC_005284.1 + 21408 0.68 0.473765
Target:  5'- aUGGCGAGcCGuCGGCA--GCGC-CGGCc -3'
miRNA:   3'- -ACCGUUC-GC-GCUGUagUGCGaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 21570 0.66 0.58964
Target:  5'- aGGCc-GCGCgGGCGUUcgACGCgcagCGGCa -3'
miRNA:   3'- aCCGuuCGCG-CUGUAG--UGCGa---GCCGa -5'
24823 5' -57.5 NC_005284.1 + 22078 0.74 0.187109
Target:  5'- cGGCcggacuGCGCGACGgaaaaGCGCUUGGCg -3'
miRNA:   3'- aCCGuu----CGCGCUGUag---UGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 24080 0.66 0.578778
Target:  5'- aUGGCGAaCGCGucCAUUAUGCagagcgcgUCGGCa -3'
miRNA:   3'- -ACCGUUcGCGCu-GUAGUGCG--------AGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.