miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 5' -57.5 NC_005284.1 + 44915 0.7 0.34506
Target:  5'- gGGCGGGUGCGaaucacucGCAcCGCGCcUCGGUg -3'
miRNA:   3'- aCCGUUCGCGC--------UGUaGUGCG-AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 10130 0.7 0.353381
Target:  5'- cGGCGacGGCGCaGACG--GCGCUCGcGCg -3'
miRNA:   3'- aCCGU--UCGCG-CUGUagUGCGAGC-CGa -5'
24823 5' -57.5 NC_005284.1 + 38914 0.7 0.353381
Target:  5'- gGGCGGGCggguugguuagGCGGCuUCcCGUUCGGCg -3'
miRNA:   3'- aCCGUUCG-----------CGCUGuAGuGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 45204 0.7 0.361843
Target:  5'- cGGC-AGCGCGAUcgCccuGCGCuUUGGCg -3'
miRNA:   3'- aCCGuUCGCGCUGuaG---UGCG-AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 6845 0.7 0.361843
Target:  5'- uUGGCGcGCGCGAUcgAUCGugUGCUCGGa- -3'
miRNA:   3'- -ACCGUuCGCGCUG--UAGU--GCGAGCCga -5'
24823 5' -57.5 NC_005284.1 + 455 0.69 0.370445
Target:  5'- cGGCGAGC-CGGCA--GCGCcuggUCGGCg -3'
miRNA:   3'- aCCGUUCGcGCUGUagUGCG----AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 48061 0.69 0.370445
Target:  5'- aGGCcGGUGCGcugcGCAUUACGCgcCGGCc -3'
miRNA:   3'- aCCGuUCGCGC----UGUAGUGCGa-GCCGa -5'
24823 5' -57.5 NC_005284.1 + 16174 0.69 0.379186
Target:  5'- gGGCucGGCGCGuCgAUgGCGCUgGGCg -3'
miRNA:   3'- aCCGu-UCGCGCuG-UAgUGCGAgCCGa -5'
24823 5' -57.5 NC_005284.1 + 36837 0.69 0.388064
Target:  5'- uUGGCGAuCGCGACuugcuuugccgcGUC-CGcCUCGGCUg -3'
miRNA:   3'- -ACCGUUcGCGCUG------------UAGuGC-GAGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 11824 0.69 0.388064
Target:  5'- cGcGCGAGCGCGGCuAUCucgaGCagCGGCUc -3'
miRNA:   3'- aC-CGUUCGCGCUG-UAGug--CGa-GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 30474 0.69 0.397077
Target:  5'- cGGCcGGCGUGAcCAUCACGUccgaacUGGCg -3'
miRNA:   3'- aCCGuUCGCGCU-GUAGUGCGa-----GCCGa -5'
24823 5' -57.5 NC_005284.1 + 31338 0.69 0.406224
Target:  5'- cGGCGAGCGaCGcGCAgaaCACGCgcugUCGGUg -3'
miRNA:   3'- aCCGUUCGC-GC-UGUa--GUGCG----AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 19464 0.69 0.414569
Target:  5'- cGGCAGGCGCuGAUcggugcgggcuggAUCACGaacgcgaugaUCGGCa -3'
miRNA:   3'- aCCGUUCGCG-CUG-------------UAGUGCg---------AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 16025 0.69 0.415502
Target:  5'- cGGuCGGGCGCGACGagauccgcaUUGCGC-CGGUa -3'
miRNA:   3'- aCC-GUUCGCGCUGU---------AGUGCGaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 31485 0.69 0.415502
Target:  5'- cGGaaAAGCGCG-CAUUGCGCgccUCGGCa -3'
miRNA:   3'- aCCg-UUCGCGCuGUAGUGCG---AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 9253 0.69 0.415502
Target:  5'- cGGCAuagAGCGCGgagcauGCGUUACGCgucccaUCGGUa -3'
miRNA:   3'- aCCGU---UCGCGC------UGUAGUGCG------AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 47708 0.68 0.424909
Target:  5'- gGGCAcGCGCGcucGCGUgCGCagaaggccguGCUCGGCg -3'
miRNA:   3'- aCCGUuCGCGC---UGUA-GUG----------CGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 17893 0.68 0.424909
Target:  5'- cGGCGGGCGCauc--CGCGCagCGGCUg -3'
miRNA:   3'- aCCGUUCGCGcuguaGUGCGa-GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 8904 0.68 0.424909
Target:  5'- cGGCAAguuGCGCGGCAgcaguggcuUCGCGCUCcacguaGCa -3'
miRNA:   3'- aCCGUU---CGCGCUGU---------AGUGCGAGc-----CGa -5'
24823 5' -57.5 NC_005284.1 + 18999 0.68 0.424909
Target:  5'- aGGCucaaugcuGGCGUGugGUCGCuGCaggCGGCg -3'
miRNA:   3'- aCCGu-------UCGCGCugUAGUG-CGa--GCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.