miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 5' -57.5 NC_005284.1 + 44754 1.07 0.000746
Target:  5'- gUGGCAAGCGCGACAUCACGCUCGGCUu -3'
miRNA:   3'- -ACCGUUCGCGCUGUAGUGCGAGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 39297 0.8 0.076805
Target:  5'- gGGUAA-CGCGACGcCGCGCUCGGCg -3'
miRNA:   3'- aCCGUUcGCGCUGUaGUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 33138 0.78 0.104948
Target:  5'- cGGCAucguGCGCGGCgAUCGCacgcuGCUCGGCg -3'
miRNA:   3'- aCCGUu---CGCGCUG-UAGUG-----CGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 45071 0.77 0.127645
Target:  5'- gGGCGAGCGCGGCuaCGCGCUCGu-- -3'
miRNA:   3'- aCCGUUCGCGCUGuaGUGCGAGCcga -5'
24823 5' -57.5 NC_005284.1 + 5396 0.75 0.161716
Target:  5'- cGGCugcuugcccgugcGGCGCGcCAgcUCGCGCUCGGCg -3'
miRNA:   3'- aCCGu------------UCGCGCuGU--AGUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 12153 0.75 0.172129
Target:  5'- cGGCAAGCGCGGCuGUCggcucgaACGCcuaCGGCUu -3'
miRNA:   3'- aCCGUUCGCGCUG-UAG-------UGCGa--GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 22078 0.74 0.187109
Target:  5'- cGGCcggacuGCGCGACGgaaaaGCGCUUGGCg -3'
miRNA:   3'- aCCGuu----CGCGCUGUag---UGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 53103 0.74 0.202687
Target:  5'- gGGCAaauccGGCGCGcuACAUCACGCcucgcaCGGCg -3'
miRNA:   3'- aCCGU-----UCGCGC--UGUAGUGCGa-----GCCGa -5'
24823 5' -57.5 NC_005284.1 + 30360 0.73 0.208125
Target:  5'- aGGCGaucgAGCGCGAgGgcgaUGCGCUCGGCc -3'
miRNA:   3'- aCCGU----UCGCGCUgUa---GUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 45146 0.73 0.219379
Target:  5'- gGGCAAG-GCGugGUCgACGCaCGGCg -3'
miRNA:   3'- aCCGUUCgCGCugUAG-UGCGaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 47806 0.73 0.231149
Target:  5'- gGGCGAGCGCuuGGCggCGCugcgauggguGCUCGGCa -3'
miRNA:   3'- aCCGUUCGCG--CUGuaGUG----------CGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 18482 0.72 0.249796
Target:  5'- gGGUgcGCGcCGAgAaCGCGCUCGGCg -3'
miRNA:   3'- aCCGuuCGC-GCUgUaGUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 10751 0.72 0.249796
Target:  5'- cGGCAAGgGgGGCcgCcgaggGCGUUCGGCUg -3'
miRNA:   3'- aCCGUUCgCgCUGuaG-----UGCGAGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 6994 0.72 0.256283
Target:  5'- aUGGCGcGCuCGACAUgGCGCUCgccgGGCUg -3'
miRNA:   3'- -ACCGUuCGcGCUGUAgUGCGAG----CCGA- -5'
24823 5' -57.5 NC_005284.1 + 10020 0.71 0.283612
Target:  5'- cGGCcuugcgcaagccGAGCGUGAUGUCGCGCUUgccacgcaGGCUc -3'
miRNA:   3'- aCCG------------UUCGCGCUGUAGUGCGAG--------CCGA- -5'
24823 5' -57.5 NC_005284.1 + 15482 0.71 0.29812
Target:  5'- cUGGUaucucgccGAGCGCGGCGUCGCGUuacccgacuUCGaGCg -3'
miRNA:   3'- -ACCG--------UUCGCGCUGUAGUGCG---------AGC-CGa -5'
24823 5' -57.5 NC_005284.1 + 45791 0.71 0.305586
Target:  5'- uUGcGCAGGCGuCGGCA---UGCUCGGCg -3'
miRNA:   3'- -AC-CGUUCGC-GCUGUaguGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 26796 0.7 0.33688
Target:  5'- gGGauaGAGCuGCaACAUCGCGCgagCGGCUu -3'
miRNA:   3'- aCCg--UUCG-CGcUGUAGUGCGa--GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 44879 0.7 0.33688
Target:  5'- cUGcGCGAGCGCGAgCG--ACGCUuCGGCg -3'
miRNA:   3'- -AC-CGUUCGCGCU-GUagUGCGA-GCCGa -5'
24823 5' -57.5 NC_005284.1 + 44915 0.7 0.34506
Target:  5'- gGGCGGGUGCGaaucacucGCAcCGCGCcUCGGUg -3'
miRNA:   3'- aCCGUUCGCGC--------UGUaGUGCG-AGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.