miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 5' -57.5 NC_005284.1 + 36837 0.69 0.388064
Target:  5'- uUGGCGAuCGCGACuugcuuugccgcGUC-CGcCUCGGCUg -3'
miRNA:   3'- -ACCGUUcGCGCUG------------UAGuGC-GAGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 44915 0.7 0.34506
Target:  5'- gGGCGGGUGCGaaucacucGCAcCGCGCcUCGGUg -3'
miRNA:   3'- aCCGUUCGCGC--------UGUaGUGCG-AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 38914 0.7 0.353381
Target:  5'- gGGCGGGCggguugguuagGCGGCuUCcCGUUCGGCg -3'
miRNA:   3'- aCCGUUCG-----------CGCUGuAGuGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 10130 0.7 0.353381
Target:  5'- cGGCGacGGCGCaGACG--GCGCUCGcGCg -3'
miRNA:   3'- aCCGU--UCGCG-CUGUagUGCGAGC-CGa -5'
24823 5' -57.5 NC_005284.1 + 6845 0.7 0.361843
Target:  5'- uUGGCGcGCGCGAUcgAUCGugUGCUCGGa- -3'
miRNA:   3'- -ACCGUuCGCGCUG--UAGU--GCGAGCCga -5'
24823 5' -57.5 NC_005284.1 + 455 0.69 0.370445
Target:  5'- cGGCGAGC-CGGCA--GCGCcuggUCGGCg -3'
miRNA:   3'- aCCGUUCGcGCUGUagUGCG----AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 48061 0.69 0.370445
Target:  5'- aGGCcGGUGCGcugcGCAUUACGCgcCGGCc -3'
miRNA:   3'- aCCGuUCGCGC----UGUAGUGCGa-GCCGa -5'
24823 5' -57.5 NC_005284.1 + 16174 0.69 0.379186
Target:  5'- gGGCucGGCGCGuCgAUgGCGCUgGGCg -3'
miRNA:   3'- aCCGu-UCGCGCuG-UAgUGCGAgCCGa -5'
24823 5' -57.5 NC_005284.1 + 11824 0.69 0.388064
Target:  5'- cGcGCGAGCGCGGCuAUCucgaGCagCGGCUc -3'
miRNA:   3'- aC-CGUUCGCGCUG-UAGug--CGa-GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 45791 0.71 0.305586
Target:  5'- uUGcGCAGGCGuCGGCA---UGCUCGGCg -3'
miRNA:   3'- -AC-CGUUCGC-GCUGUaguGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 15482 0.71 0.29812
Target:  5'- cUGGUaucucgccGAGCGCGGCGUCGCGUuacccgacuUCGaGCg -3'
miRNA:   3'- -ACCG--------UUCGCGCUGUAGUGCG---------AGC-CGa -5'
24823 5' -57.5 NC_005284.1 + 10020 0.71 0.283612
Target:  5'- cGGCcuugcgcaagccGAGCGUGAUGUCGCGCUUgccacgcaGGCUc -3'
miRNA:   3'- aCCG------------UUCGCGCUGUAGUGCGAG--------CCGA- -5'
24823 5' -57.5 NC_005284.1 + 12153 0.75 0.172129
Target:  5'- cGGCAAGCGCGGCuGUCggcucgaACGCcuaCGGCUu -3'
miRNA:   3'- aCCGUUCGCGCUG-UAG-------UGCGa--GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 53103 0.74 0.202687
Target:  5'- gGGCAaauccGGCGCGcuACAUCACGCcucgcaCGGCg -3'
miRNA:   3'- aCCGU-----UCGCGC--UGUAGUGCGa-----GCCGa -5'
24823 5' -57.5 NC_005284.1 + 30360 0.73 0.208125
Target:  5'- aGGCGaucgAGCGCGAgGgcgaUGCGCUCGGCc -3'
miRNA:   3'- aCCGU----UCGCGCUgUa---GUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 45146 0.73 0.219379
Target:  5'- gGGCAAG-GCGugGUCgACGCaCGGCg -3'
miRNA:   3'- aCCGUUCgCGCugUAG-UGCGaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 47806 0.73 0.231149
Target:  5'- gGGCGAGCGCuuGGCggCGCugcgauggguGCUCGGCa -3'
miRNA:   3'- aCCGUUCGCG--CUGuaGUG----------CGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 10751 0.72 0.249796
Target:  5'- cGGCAAGgGgGGCcgCcgaggGCGUUCGGCUg -3'
miRNA:   3'- aCCGUUCgCgCUGuaG-----UGCGAGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 18482 0.72 0.249796
Target:  5'- gGGUgcGCGcCGAgAaCGCGCUCGGCg -3'
miRNA:   3'- aCCGuuCGC-GCUgUaGUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 6994 0.72 0.256283
Target:  5'- aUGGCGcGCuCGACAUgGCGCUCgccgGGCUg -3'
miRNA:   3'- -ACCGUuCGcGCUGUAgUGCGAG----CCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.