miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 5' -57.5 NC_005284.1 + 4667 0.66 0.578778
Target:  5'- aUGGCGAacgccgcguGCGCGaucgccGCGUUACGUucucgaugcuguUCGGCUg -3'
miRNA:   3'- -ACCGUU---------CGCGC------UGUAGUGCG------------AGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 5396 0.75 0.161716
Target:  5'- cGGCugcuugcccgugcGGCGCGcCAgcUCGCGCUCGGCg -3'
miRNA:   3'- aCCGu------------UCGCGCuGU--AGUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 39297 0.8 0.076805
Target:  5'- gGGUAA-CGCGACGcCGCGCUCGGCg -3'
miRNA:   3'- aCCGUUcGCGCUGUaGUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 44754 1.07 0.000746
Target:  5'- gUGGCAAGCGCGACAUCACGCUCGGCUu -3'
miRNA:   3'- -ACCGUUCGCGCUGUAGUGCGAGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 47714 0.66 0.535849
Target:  5'- cGGCAAGCcgauCGGCGUCggugaACG-UCGGCg -3'
miRNA:   3'- aCCGUUCGc---GCUGUAG-----UGCgAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 54068 0.67 0.525282
Target:  5'- cGGCAgcaguucaaucAGUGCGAgcUUuCGCUCGGCc -3'
miRNA:   3'- aCCGU-----------UCGCGCUguAGuGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 899 0.67 0.483874
Target:  5'- aGGCAAGCGaCGACGgccgC-CGCauccCGGCc -3'
miRNA:   3'- aCCGUUCGC-GCUGUa---GuGCGa---GCCGa -5'
24823 5' -57.5 NC_005284.1 + 21408 0.68 0.473765
Target:  5'- aUGGCGAGcCGuCGGCA--GCGC-CGGCc -3'
miRNA:   3'- -ACCGUUC-GC-GCUGUagUGCGaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 9253 0.69 0.415502
Target:  5'- cGGCAuagAGCGCGgagcauGCGUUACGCgucccaUCGGUa -3'
miRNA:   3'- aCCGU---UCGCGC------UGUAGUGCG------AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 22078 0.74 0.187109
Target:  5'- cGGCcggacuGCGCGACGgaaaaGCGCUUGGCg -3'
miRNA:   3'- aCCGuu----CGCGCUGUag---UGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 26901 0.7 0.34506
Target:  5'- gGGCuuaugcauGCGCGACAugaugggaUCGCcCUCGGCg -3'
miRNA:   3'- aCCGuu------CGCGCUGU--------AGUGcGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 8904 0.68 0.424909
Target:  5'- cGGCAAguuGCGCGGCAgcaguggcuUCGCGCUCcacguaGCa -3'
miRNA:   3'- aCCGUU---CGCGCUGU---------AGUGCGAGc-----CGa -5'
24823 5' -57.5 NC_005284.1 + 38106 0.66 0.578778
Target:  5'- cGGCAcGC-CGACGccggccUCACGCUCgacGGCc -3'
miRNA:   3'- aCCGUuCGcGCUGU------AGUGCGAG---CCGa -5'
24823 5' -57.5 NC_005284.1 + 44879 0.7 0.33688
Target:  5'- cUGcGCGAGCGCGAgCG--ACGCUuCGGCg -3'
miRNA:   3'- -AC-CGUUCGCGCU-GUagUGCGA-GCCGa -5'
24823 5' -57.5 NC_005284.1 + 24080 0.66 0.578778
Target:  5'- aUGGCGAaCGCGucCAUUAUGCagagcgcgUCGGCa -3'
miRNA:   3'- -ACCGUUcGCGCu-GUAGUGCG--------AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 40171 0.68 0.444098
Target:  5'- aGGUAGcGCGCGA----GCGUUCGGCg -3'
miRNA:   3'- aCCGUU-CGCGCUguagUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 26796 0.7 0.33688
Target:  5'- gGGauaGAGCuGCaACAUCGCGCgagCGGCUu -3'
miRNA:   3'- aCCg--UUCG-CGcUGUAGUGCGa--GCCGA- -5'
24823 5' -57.5 NC_005284.1 + 33138 0.78 0.104948
Target:  5'- cGGCAucguGCGCGGCgAUCGCacgcuGCUCGGCg -3'
miRNA:   3'- aCCGUu---CGCGCUG-UAGUG-----CGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 39603 0.66 0.535849
Target:  5'- -cGCGAGCGCGAa--CugGUcggUCGGCa -3'
miRNA:   3'- acCGUUCGCGCUguaGugCG---AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 33180 0.67 0.49306
Target:  5'- cGGC--GCGCGAgAUCuugcccaACGCUuCGGCa -3'
miRNA:   3'- aCCGuuCGCGCUgUAG-------UGCGA-GCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.