miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 5' -57.5 NC_005284.1 + 455 0.69 0.370445
Target:  5'- cGGCGAGC-CGGCA--GCGCcuggUCGGCg -3'
miRNA:   3'- aCCGUUCGcGCUGUagUGCG----AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 899 0.67 0.483874
Target:  5'- aGGCAAGCGaCGACGgccgC-CGCauccCGGCc -3'
miRNA:   3'- aCCGUUCGC-GCUGUa---GuGCGa---GCCGa -5'
24823 5' -57.5 NC_005284.1 + 1671 0.66 0.567961
Target:  5'- cGGCuuuucuGGCaCGACAUCgACGggCGGCg -3'
miRNA:   3'- aCCGu-----UCGcGCUGUAG-UGCgaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 2028 0.68 0.453872
Target:  5'- cGGCGGGC-CGAuucCAUCACGa-CGGCa -3'
miRNA:   3'- aCCGUUCGcGCU---GUAGUGCgaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 4667 0.66 0.578778
Target:  5'- aUGGCGAacgccgcguGCGCGaucgccGCGUUACGUucucgaugcuguUCGGCUg -3'
miRNA:   3'- -ACCGUU---------CGCGC------UGUAGUGCG------------AGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 5396 0.75 0.161716
Target:  5'- cGGCugcuugcccgugcGGCGCGcCAgcUCGCGCUCGGCg -3'
miRNA:   3'- aCCGu------------UCGCGCuGU--AGUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 6845 0.7 0.361843
Target:  5'- uUGGCGcGCGCGAUcgAUCGugUGCUCGGa- -3'
miRNA:   3'- -ACCGUuCGCGCUG--UAGU--GCGAGCCga -5'
24823 5' -57.5 NC_005284.1 + 6994 0.72 0.256283
Target:  5'- aUGGCGcGCuCGACAUgGCGCUCgccgGGCUg -3'
miRNA:   3'- -ACCGUuCGcGCUGUAgUGCGAG----CCGA- -5'
24823 5' -57.5 NC_005284.1 + 7464 0.66 0.557195
Target:  5'- -cGCGAGCGaCGAaaaggaAUCcgaGCUCGGCUu -3'
miRNA:   3'- acCGUUCGC-GCUg-----UAGug-CGAGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 7638 0.68 0.453872
Target:  5'- cGGCAuGGUGCGuCAguaCACGUgggCGGCg -3'
miRNA:   3'- aCCGU-UCGCGCuGUa--GUGCGa--GCCGa -5'
24823 5' -57.5 NC_005284.1 + 8023 0.68 0.473765
Target:  5'- aGGCGAauGCGCGGCuguucguucguGUCGUGUUCGGUg -3'
miRNA:   3'- aCCGUU--CGCGCUG-----------UAGUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 8904 0.68 0.424909
Target:  5'- cGGCAAguuGCGCGGCAgcaguggcuUCGCGCUCcacguaGCa -3'
miRNA:   3'- aCCGUU---CGCGCUGU---------AGUGCGAGc-----CGa -5'
24823 5' -57.5 NC_005284.1 + 9253 0.69 0.415502
Target:  5'- cGGCAuagAGCGCGgagcauGCGUUACGCgucccaUCGGUa -3'
miRNA:   3'- aCCGU---UCGCGC------UGUAGUGCG------AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 9495 0.67 0.525282
Target:  5'- -cGCAGGCgGCGACA--GCGUgggUCGGCg -3'
miRNA:   3'- acCGUUCG-CGCUGUagUGCG---AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 9570 0.68 0.463763
Target:  5'- aGGCAgcgcucgccaaAGCGCagGGCgAUCGCGCUgccgCGGCg -3'
miRNA:   3'- aCCGU-----------UCGCG--CUG-UAGUGCGA----GCCGa -5'
24823 5' -57.5 NC_005284.1 + 9814 0.66 0.572282
Target:  5'- cGGCAgucaggaaaucGGCGCGcGCAUCACGggcacgcccuacgCGGCg -3'
miRNA:   3'- aCCGU-----------UCGCGC-UGUAGUGCga-----------GCCGa -5'
24823 5' -57.5 NC_005284.1 + 9894 0.66 0.546489
Target:  5'- aGGagcuCGAGCGCGcCGaagcgucgcUCGCGCUCGcGCa -3'
miRNA:   3'- aCC----GUUCGCGCuGU---------AGUGCGAGC-CGa -5'
24823 5' -57.5 NC_005284.1 + 10020 0.71 0.283612
Target:  5'- cGGCcuugcgcaagccGAGCGUGAUGUCGCGCUUgccacgcaGGCUc -3'
miRNA:   3'- aCCG------------UUCGCGCUGUAGUGCGAG--------CCGA- -5'
24823 5' -57.5 NC_005284.1 + 10130 0.7 0.353381
Target:  5'- cGGCGacGGCGCaGACG--GCGCUCGcGCg -3'
miRNA:   3'- aCCGU--UCGCG-CUGUagUGCGAGC-CGa -5'
24823 5' -57.5 NC_005284.1 + 10387 0.66 0.567961
Target:  5'- cGGCu-GCGCacgaagcaagaGGCGUCGCGggCGGCc -3'
miRNA:   3'- aCCGuuCGCG-----------CUGUAGUGCgaGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.